RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 NEK7Q8TDX7 302 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 LMX1AQ8TE12 382 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 BLNKQ8WV28 456 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 DYDC1Q8WWB3 177 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 NELFBQ8WX92 580 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 ACOT12Q8WYK0 555 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 CCL17Q92583 94 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 FAM131CQ96AQ9 280 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 UBE2WQ96B02 151 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 TESCQ96BS2 214 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 DGCR14Q96DF8 476 aaKnown RBP0.8□□□□□ -2.28
SMC4-220ENST00000488017 C20orf166-AS1Q96NR2 134 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 HBEGFQ99075 208 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 LINC01587Q99440 93 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 EBNA1BP2Q99848 306 aaKnown RBP0.8□□□□□ -2.28
SMC4-220ENST00000488017 ZNF251Q9BRH9 671 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 COPS4Q9BT78 406 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 TMEM109Q9BVC6 243 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 GGACTQ9BVM4 153 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 HINT2Q9BX68 163 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 TSSK6Q9BXA6 273 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 MAP1LC3CQ9BXW4 147 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 POMKQ9H5K3 350 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 WDR54Q9H977 334 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 RHOFQ9HBH0 211 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 ANKHQ9HCJ1 492 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 VCX3AQ9NNX9 186 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 IFT46Q9NQC8 304 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 XPNPEP1Q9NQW7 623 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 PARVAQ9NVD7 372 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 TAS2R9Q9NYW1 312 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 STMN3Q9NZ72 180 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 MAT2BQ9NZL9 334 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 OR5V1Q9UGF6 321 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 MRM2Q9UI43 246 aaKnown RBP0.8□□□□□ -2.28
SMC4-220ENST00000488017 USH1CQ9Y6N9 552 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 ZNF142P52746 1687 aaPredicted RBP0.8□□□□□ -2.28
SMC4-220ENST00000488017 PREX1Q8TCU6 1659 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 FMN2Q9NZ56 1722 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 RGPD8O14715 1765 aaPredicted RBP0.8□□□□□ -2.28
SMC4-220ENST00000488017 RGPD5Q99666 1765 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 KIDINS220Q9ULH0 1771 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 PRRC2BQ5JSZ5 2229 aaKnown RBP0.8□□□□□ -2.28
SMC4-220ENST00000488017 TSC2P49815 1807 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 LAMA4Q16363 1823 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 NAIPQ13075 1403 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 C9orf84Q5VXU9 1444 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 TRAPPC8Q9Y2L5 1435 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 PLXNA3P51805 1871 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 CEP164Q9UPV0 1460 aa0.8□□□□□ -2.28
SMC4-220ENST00000488017 DENND4CQ5VZ89 1909 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 TOPBP1Q92547 1522 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 UNC13BO14795 1591 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 SYNMO15061 1565 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 PLXNC1O60486 1568 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 IQGAP2Q13576 1575 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 VWDEQ8N2E2 1590 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 REREQ9P2R6 1566 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 PIK3C2BO00750 1634 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 KDM6BO15054 1643 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 CC2D2AQ9P2K1 1620 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 ALKQ9UM73 1620 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 RGPD1P0DJD0 1748 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 NRAPQ86VF7 1730 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 UBR1Q8IWV7 1749 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 DDX60Q8IY21 1712 aaKnown RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 A0A1B0GW15 77 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 A0A1B0GXF2 115 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 LINC00862A6NCI5 91 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 E5RI56 91 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 K7EP13 123 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 M0QYV0 167 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 PSMD12O00232 456 aaPredicted RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 RFXANKO14593 260 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 PRMT5O14744 637 aaPredicted RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 PSCAO43653 123 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 SLC37A4O43826 429 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 KLRC4O43908 158 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 FADS1O60427 444 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 UGT2B11O75310 529 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 KRT75O95678 551 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 GPR75O95800 540 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 CST4P01036 141 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 HLA-AP01891 365 aaKnown RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 TNNC2P02585 160 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 APOA1P02647 267 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 RD3LP0DJH9 198 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 IFI30P13284 250 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 KCNE1P15382 129 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 CSRP1P21291 193 aaKnown RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 S100PP25815 95 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 IL12BP29460 328 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 ERP29P30040 261 aaKnown RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 CCR7P32248 378 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 UGT2B10P36537 528 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 CD200P41217 278 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 RPL35P42766 123 aaKnown RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 MAGEA2P43356 314 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 GABRA4P48169 554 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 SERPINB10P48595 397 aa0.79□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms