RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 FOXRED2Q8IWF2 684 aa11.64□□□□□ -0.55
CUX1-209ENST00000487284 CT45A3Q8NHU0 189 aa11.64□□□□□ -0.55
CUX1-209ENST00000487284 TCTEX1D2Q8WW35 142 aa11.64□□□□□ -0.55
CUX1-209ENST00000487284 H1FXQ92522 213 aaKnown RBP11.64□□□□□ -0.55
CUX1-209ENST00000487284 LSM5Q9Y4Y9 91 aaKnown RBP11.64□□□□□ -0.55
CUX1-209ENST00000487284 POMT1Q9Y6A1 747 aa11.64□□□□□ -0.55
CUX1-209ENST00000487284 A0A1B0GU03 582 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 KANTRA0A1W2PQU2 76 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 MSGN1A6NI15 193 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 LINC00473A8K010 186 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 C17orf98A8MV24 154 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 PITX3O75364 302 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 CFDP00746 253 aaPredicted RBP11.63□□□□□ -0.55
CUX1-209ENST00000487284 IFNA7P01567 189 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 CCL3L1P16619 93 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 NFYBP25208 207 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 DUTP33316 252 aaKnown RBP11.63□□□□□ -0.55
CUX1-209ENST00000487284 NUP62P37198 522 aaPredicted RBP11.63□□□□□ -0.55
CUX1-209ENST00000487284 LPAR6P43657 344 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 DLX6P56179 175 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 BRWD1-AS2P59051 145 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 ZNF841Q6ZN19 808 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 SLC51BQ86UW2 128 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 LEAP2Q969E1 77 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 GPR146Q96CH1 333 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 C11orf1Q9H5F2 150 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 MIOXQ9UGB7 285 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 MALRD1Q5VYJ5 2156 aa11.63□□□□□ -0.55
CUX1-209ENST00000487284 VWC2LB2RUY7 222 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 E5RGE8 158 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 GPR37O15354 613 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 KCNAB3O43448 404 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 RAMP3O60896 148 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 IGHV3-7P01780 117 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 NKX2-1P43699 371 aaPredicted RBP11.62□□□□□ -0.55
CUX1-209ENST00000487284 AKR1C2P52895 323 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 DSCR9P59020 149 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 EXOSC2Q13868 293 aaKnown RBP11.62□□□□□ -0.55
CUX1-209ENST00000487284 NDUFA5Q16718 116 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 SLC25A48Q6ZT89 311 aaKnown RBP11.62□□□□□ -0.55
CUX1-209ENST00000487284 ODF3L1Q8IXM7 274 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 SPAG16Q8N0X2 631 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 NEIL1Q96FI4 390 aaPredicted RBP11.62□□□□□ -0.55
CUX1-209ENST00000487284 PATZ1Q9HBE1 687 aaKnown RBP11.62□□□□□ -0.55
CUX1-209ENST00000487284 RCL1Q9Y2P8 373 aaKnown RBP11.62□□□□□ -0.55
CUX1-209ENST00000487284 NSG2Q9Y328 171 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 NOTCH2Q04721 2471 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 MED13LQ71F56 2210 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 F5H0A9 414 aaPredicted RBP11.62□□□□□ -0.55
CUX1-209ENST00000487284 M0R1X1 148 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 P0C879 139 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 HKR1P10072 659 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 ID3Q02535 119 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 RPL39P5Q59GN2 51 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 Q5PR19 223 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 NCR3LG1Q68D85 454 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 DMBX1Q8NFW5 382 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 OR8B3Q8NGG8 313 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 CLDND2Q8NHS1 167 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 RNASE11Q8TAA1 199 aaKnown RBP11.62□□□□□ -0.55
CUX1-209ENST00000487284 CD300LFQ8TDQ1 290 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 OR8B2Q96RD0 313 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 ARPC5LQ9BPX5 153 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 ZNF251Q9BRH9 671 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 PLEKHA2Q9HB19 425 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 ABCA2Q9BZC7 2435 aa11.62□□□□□ -0.55
CUX1-209ENST00000487284 SAA2-SAA4A0A096LPE2 208 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 IGHV4-61A0A0C4DH41 118 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 A0A1W2PPE3 182 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 RAB29O14966 203 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 RBFOX2O43251 390 aaKnown RBP eCLIP11.61□□□□□ -0.55
CUX1-209ENST00000487284 ATG12O94817 140 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 IGHV2-5P01817 119 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 SAA2P0DJI9 122 aaPredicted RBP11.61□□□□□ -0.55
CUX1-209ENST00000487284 EPHA1P21709 976 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 UBA52P62987 128 aaKnown RBP11.61□□□□□ -0.55
CUX1-209ENST00000487284 OR2B11Q5JQS5 317 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 KRTAP1-3Q8IUG1 177 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 C8orf31Q8N9H6 132 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 RAB39BQ96DA2 213 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 UBQLN2Q9UHD9 624 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 MMP24Q9Y5R2 645 aa11.61□□□□□ -0.55
CUX1-209ENST00000487284 PRRC2AP48634 2157 aaKnown RBP11.61□□□□□ -0.55
CUX1-209ENST00000487284 A0A087X0M5 115 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 A0A1B0GX30 115 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 ATP6V1G1O75348 118 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 S1PR2O95136 353 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 MMP9P14780 707 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 RPL12P30050 165 aaKnown RBP11.6□□□□□ -0.55
CUX1-209ENST00000487284 P2RY1P47900 373 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 GNG10P50151 68 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 LINC00205P59089 165 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 LMO4P61968 165 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 ZNF816Q0VGE8 651 aaPredicted RBP11.6□□□□□ -0.55
CUX1-209ENST00000487284 CXorf66Q5JRM2 361 aaPredicted RBP11.6□□□□□ -0.55
CUX1-209ENST00000487284 WDR25Q64LD2 544 aaPredicted RBP11.6□□□□□ -0.55
CUX1-209ENST00000487284 Q6ZRM9 215 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 C1orf229Q6ZS94 237 aaPredicted RBP11.6□□□□□ -0.55
CUX1-209ENST00000487284 C8orf46Q8TAG6 207 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 ZNF596Q8TC21 504 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms