RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 NCR3LG1Q68D85 454 aa16.69■□□□□ 0.26
VPS53-201ENST00000291074 SNIP1Q8TAD8 396 aaKnown RBP16.69■□□□□ 0.26
VPS53-201ENST00000291074 RCC1LQ96I51 464 aaKnown RBP16.69■□□□□ 0.26
VPS53-201ENST00000291074 SMG1Q96Q15 3661 aaKnown RBP16.69■□□□□ 0.26
VPS53-201ENST00000291074 FAM234AQ9H0X4 552 aa16.69■□□□□ 0.26
VPS53-201ENST00000291074 GNG12Q9UBI6 72 aa16.69■□□□□ 0.26
VPS53-201ENST00000291074 PIEZO2Q9H5I5 2752 aa16.69■□□□□ 0.26
VPS53-201ENST00000291074 DMXL2Q8TDJ6 3036 aa16.69■□□□□ 0.26
VPS53-201ENST00000291074 ZFP92A6NM28 416 aa16.69■□□□□ 0.26
VPS53-201ENST00000291074 RBMXL2O75526 392 aaKnown RBP16.69■□□□□ 0.26
VPS53-201ENST00000291074 CLDN14O95500 239 aa16.69■□□□□ 0.26
VPS53-201ENST00000291074 EIF2S3P41091 472 aaKnown RBP16.69■□□□□ 0.26
VPS53-201ENST00000291074 NKX6-1P78426 367 aaPredicted RBP16.69■□□□□ 0.26
VPS53-201ENST00000291074 UTF1Q5T230 341 aa16.69■□□□□ 0.26
VPS53-201ENST00000291074 ZNF787Q6DD87 383 aa16.69■□□□□ 0.26
VPS53-201ENST00000291074 C1orf174Q8IYL3 243 aa16.69■□□□□ 0.26
VPS53-201ENST00000291074 PSMG3Q9BT73 122 aaPredicted RBP16.69■□□□□ 0.26
VPS53-201ENST00000291074 ZGRF1Q86YA3 2104 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 MEOX2P50222 304 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 EDDM3BP56851 147 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 RAB2AP61019 212 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 FAM27E3Q08E93 113 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 H2BFWTQ7Z2G1 175 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 LURAP1LQ8IV03 231 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 TAF15Q92804 592 aaKnown RBP eCLIP16.68■□□□□ 0.26
VPS53-201ENST00000291074 MUCL1Q96DR8 90 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 BSNQ9UPA5 3926 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 LOC102723971A0A1B0GUV8 181 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 FOLR2P14207 255 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 GLRXP35754 106 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 RPS23P62266 143 aaKnown RBP16.68■□□□□ 0.26
VPS53-201ENST00000291074 HTD2P86397 168 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 RAB39BQ96DA2 213 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 HIPK2Q9H2X6 1198 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 DSCAML1Q8TD84 2053 aa16.68■□□□□ 0.26
VPS53-201ENST00000291074 RAI1Q7Z5J4 1906 aaPredicted RBP16.67■□□□□ 0.26
VPS53-201ENST00000291074 MT-ND4LP03901 98 aa16.67■□□□□ 0.26
VPS53-201ENST00000291074 HSPB1P04792 205 aaKnown RBP16.67■□□□□ 0.26
VPS53-201ENST00000291074 GPR12P47775 334 aa16.67■□□□□ 0.26
VPS53-201ENST00000291074 ZNF66Q6ZN08 573 aa16.67■□□□□ 0.26
VPS53-201ENST00000291074 DTD1Q8TEA8 209 aa16.67■□□□□ 0.26
VPS53-201ENST00000291074 TUBA4BQ9H853 241 aa16.67■□□□□ 0.26
VPS53-201ENST00000291074 BIN3Q9NQY0 253 aa16.67■□□□□ 0.26
VPS53-201ENST00000291074 TRAV1-1A0A0B4J248 108 aa16.67■□□□□ 0.26
VPS53-201ENST00000291074 TRAV20A0A0B4J274 112 aa16.67■□□□□ 0.26
VPS53-201ENST00000291074 MARCH11A6NNE9 402 aa16.67■□□□□ 0.26
VPS53-201ENST00000291074 ADH4P08319 380 aa16.67■□□□□ 0.26
VPS53-201ENST00000291074 PTAFRP25105 342 aa16.67■□□□□ 0.26
VPS53-201ENST00000291074 DUX4L9Q6RFH8 374 aaPredicted RBP16.67■□□□□ 0.26
VPS53-201ENST00000291074 HSD17B10Q99714 261 aaKnown RBP16.67■□□□□ 0.26
VPS53-201ENST00000291074 ZNF727A8MUV8 499 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 MGST3O14880 152 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 RAB29O14966 203 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 BMP5P22003 454 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 OR2B8PP59922 312 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 PAX5Q02548 391 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 MORN2Q502X0 79 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 ZNF429Q86V71 674 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 SNX22Q96L94 193 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 MRPL37Q9BZE1 423 aaKnown RBP16.66■□□□□ 0.26
VPS53-201ENST00000291074 PCNX1Q96RV3 2341 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 FCGR3BO75015 233 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 IGKV1D-33P01593 117 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 IGKV1-33P01594 117 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 RPL39P5Q59GN2 51 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 TRAT1Q6PIZ9 186 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 LEAP2Q969E1 77 aa16.66■□□□□ 0.26
VPS53-201ENST00000291074 PMS2P5A8MQ11 134 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 OR8U8P0C7N1 319 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 DUTP33316 252 aaKnown RBP16.65■□□□□ 0.26
VPS53-201ENST00000291074 ZNF134P52741 427 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 RAB5BP61020 215 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 KHDC3LQ587J8 217 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 SSX9Q7RTT3 188 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 R3HDM4Q96D70 268 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 UNKLQ9H9P5 680 aaKnown RBP16.65■□□□□ 0.26
VPS53-201ENST00000291074 APC2O95996 2303 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 ROS1P08922 2347 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 TANC2Q9HCD6 1990 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 OR9G9P0C7N8 305 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 TIMP3P35625 211 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 TMEM41BQ5BJD5 291 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 NANPQ8TBE9 248 aa16.65■□□□□ 0.26
VPS53-201ENST00000291074 QTRT1Q9BXR0 403 aaKnown RBP16.65■□□□□ 0.26
VPS53-201ENST00000291074 TET2Q6N021 2002 aaPredicted RBP16.65■□□□□ 0.26
VPS53-201ENST00000291074 CEBPZOSA8MTT3 80 aa16.64■□□□□ 0.26
VPS53-201ENST00000291074 C1orf196B1AJZ1 125 aa16.64■□□□□ 0.26
VPS53-201ENST00000291074 RAB5AP20339 215 aa16.64■□□□□ 0.26
VPS53-201ENST00000291074 GZMHP20718 246 aa16.64■□□□□ 0.26
VPS53-201ENST00000291074 CFHR2P36980 270 aa16.64■□□□□ 0.26
VPS53-201ENST00000291074 LOXL3P58215 753 aa16.64■□□□□ 0.26
VPS53-201ENST00000291074 SERF2P84101 59 aa16.64■□□□□ 0.26
VPS53-201ENST00000291074 ACSM6Q6P461 480 aa16.64■□□□□ 0.26
VPS53-201ENST00000291074 FAM90A1Q86YD7 464 aa16.64■□□□□ 0.26
VPS53-201ENST00000291074 MBD3L1Q8WWY6 194 aa16.64■□□□□ 0.26
VPS53-201ENST00000291074 EDARADDQ8WWZ3 215 aa16.64■□□□□ 0.26
VPS53-201ENST00000291074 DCHS1Q96JQ0 3298 aa16.64■□□□□ 0.25
VPS53-201ENST00000291074 IGLV3-9A0A075B6K5 115 aa16.64■□□□□ 0.25
VPS53-201ENST00000291074 M0R1X1 148 aa16.64■□□□□ 0.25
VPS53-201ENST00000291074 HMGB3O15347 200 aaKnown RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms