RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 TRAV18A0A075B6X5 111 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 OR5H14A6NHG9 310 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 AP4M1O00189 453 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 NBR2O15453 112 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 DIRAS3O95661 229 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 OR8U9P0C7N5 309 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 SOX6P35712 828 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 PNLIPRP3Q17RR3 467 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 KHDC1LQ5JSQ8 128 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 CROCCP3Q8IVE0 287 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 OR5AN1Q8NGI8 311 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 OR8U1Q8NH10 309 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 R3HDM4Q96D70 268 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 C5orf30Q96GV9 206 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 GINS4Q9BRT9 223 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 MEGF8Q7Z7M0 2845 aa12.38□□□□□ -0.43
LIG3-215ENST00000592690 H7C2Y5 167 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 M0R1X1 148 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 KCNAB3O43448 404 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 OPN1MWP04001 364 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 OPN1MW2P0DN77 364 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 OPN1MW3P0DN78 364 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 PTHLHP12272 177 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 VBP1P61758 197 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 PITPNAQ00169 270 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 H1FOOQ8IZA3 346 aaPredicted RBP12.37□□□□□ -0.43
LIG3-215ENST00000592690 ZNF383Q8NA42 475 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 NPBQ8NG41 125 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 NAA50Q9GZZ1 169 aaKnown RBP12.37□□□□□ -0.43
LIG3-215ENST00000592690 DCSTAMPQ9H295 470 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 SDHAF2Q9NX18 166 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 ZNF107Q9UII5 783 aaPredicted RBP12.37□□□□□ -0.43
LIG3-215ENST00000592690 WASHC3Q9Y3C0 194 aa12.37□□□□□ -0.43
LIG3-215ENST00000592690 TSSC4Q9Y5U2 329 aaPredicted RBP12.37□□□□□ -0.43
LIG3-215ENST00000592690 A0A0A6YYH2 397 aa12.36□□□□□ -0.43
LIG3-215ENST00000592690 A6NJ64 397 aa12.36□□□□□ -0.43
LIG3-215ENST00000592690 TMEM127O75204 238 aa12.36□□□□□ -0.43
LIG3-215ENST00000592690 NDUFA3O95167 84 aa12.36□□□□□ -0.43
LIG3-215ENST00000592690 TFAP2AP05549 437 aa12.36□□□□□ -0.43
LIG3-215ENST00000592690 MC5RP33032 325 aa12.36□□□□□ -0.43
LIG3-215ENST00000592690 C5orf64Q2M2E5 130 aa12.36□□□□□ -0.43
LIG3-215ENST00000592690 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.36□□□□□ -0.43
LIG3-215ENST00000592690 OR4F17Q8NGA8 305 aa12.36□□□□□ -0.43
LIG3-215ENST00000592690 SLC25A46Q96AG3 418 aa12.36□□□□□ -0.43
LIG3-215ENST00000592690 OR4F4Q96R69 305 aa12.36□□□□□ -0.43
LIG3-215ENST00000592690 HLA-DRB1P01911 266 aa12.35□□□□□ -0.43
LIG3-215ENST00000592690 SLC35B1P78383 322 aa12.35□□□□□ -0.43
LIG3-215ENST00000592690 UBE2NLQ5JXB2 153 aa12.35□□□□□ -0.43
LIG3-215ENST00000592690 GVQW1Q8N7I0 195 aa12.35□□□□□ -0.43
LIG3-215ENST00000592690 SAMD12Q8N8I0 201 aa12.35□□□□□ -0.43
LIG3-215ENST00000592690 FBXL15Q9H469 300 aa12.35□□□□□ -0.43
LIG3-215ENST00000592690 AUNIPQ9H7T9 357 aa12.35□□□□□ -0.43
LIG3-215ENST00000592690 DIABLOQ9NR28 239 aa12.35□□□□□ -0.43
LIG3-215ENST00000592690 KIAA1456Q9P272 454 aa12.35□□□□□ -0.43
LIG3-215ENST00000592690 GAB2Q9UQC2 676 aa12.35□□□□□ -0.43
LIG3-215ENST00000592690 RBM7Q9Y580 266 aaKnown RBP12.35□□□□□ -0.43
LIG3-215ENST00000592690 NOTCH1P46531 2555 aa12.35□□□□□ -0.43
LIG3-215ENST00000592690 IGHV7-81A0A0B4J1V7 117 aa12.34□□□□□ -0.43
LIG3-215ENST00000592690 RRHO14718 337 aa12.34□□□□□ -0.43
LIG3-215ENST00000592690 WIPF1O43516 503 aa12.34□□□□□ -0.43
LIG3-215ENST00000592690 IGKV1-16P04430 117 aa12.34□□□□□ -0.43
LIG3-215ENST00000592690 NFYAP23511 347 aaPredicted RBP12.34□□□□□ -0.43
LIG3-215ENST00000592690 CFHR3Q02985 330 aa12.34□□□□□ -0.43
LIG3-215ENST00000592690 CNIH2Q6PI25 160 aa12.34□□□□□ -0.43
LIG3-215ENST00000592690 LCNL1Q6ZST4 164 aa12.34□□□□□ -0.43
LIG3-215ENST00000592690 C18orf65Q6ZTR6 163 aa12.34□□□□□ -0.43
LIG3-215ENST00000592690 C1QL4Q86Z23 238 aa12.34□□□□□ -0.43
LIG3-215ENST00000592690 MRPS26Q9BYN8 205 aaKnown RBP12.34□□□□□ -0.43
LIG3-215ENST00000592690 ANXA10Q9UJ72 324 aa12.34□□□□□ -0.43
LIG3-215ENST00000592690 J3QRK9 145 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 ATP6V0E1O15342 81 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 XRCC3O43542 346 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 RBBP9O75884 186 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 GABARAPO95166 117 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 APOA2P02652 100 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 IGF1P05019 195 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 FCER2P06734 321 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 CTXN2P0C2S0 81 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 PF4V1P10720 104 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 RPL23AP62750 156 aaKnown RBP12.33□□□□□ -0.44
LIG3-215ENST00000592690 NDPQ00604 133 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 CTF1Q16619 201 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 LIN54Q6MZP7 749 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 ANKRD13BQ86YJ7 626 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 PDPNQ86YL7 162 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 COMMD1Q8N668 190 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 S100A16Q96FQ6 103 aaKnown RBP12.33□□□□□ -0.44
LIG3-215ENST00000592690 OR51J1Q9H342 316 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 PARP11Q9NR21 331 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 SLC35D1Q9NTN3 355 aa12.33□□□□□ -0.44
LIG3-215ENST00000592690 IGKV1D-13A0A0B4J2D9 117 aa12.32□□□□□ -0.44
LIG3-215ENST00000592690 MEIS3P1A6NDR6 274 aa12.32□□□□□ -0.44
LIG3-215ENST00000592690 G3V318 75 aa12.32□□□□□ -0.44
LIG3-215ENST00000592690 FCN1O00602 326 aa12.32□□□□□ -0.44
LIG3-215ENST00000592690 EIF4EP06730 217 aaKnown RBP12.32□□□□□ -0.44
LIG3-215ENST00000592690 IGKV1-13P0DP09 117 aa12.32□□□□□ -0.44
LIG3-215ENST00000592690 VDAC1P21796 283 aa12.32□□□□□ -0.44
LIG3-215ENST00000592690 ALDH3B2P48448 385 aa12.32□□□□□ -0.44
LIG3-215ENST00000592690 RPS16P62249 146 aaKnown RBP12.32□□□□□ -0.44
LIG3-215ENST00000592690 DEFA6Q01524 100 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms