RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 RPUSD1Q9UJJ7 312 aaKnown RBP8.65□□□□□ -1.02
SS18-217ENST00000580958 TRBV23-1A0A0A0MS06 115 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 M0R1X1 148 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 CLDN1O95832 211 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 SCGB1D2O95969 90 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 IGKV1-39P01597 117 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 IGKV1D-39P04432 117 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 LPAR6P43657 344 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 GPR6P46095 362 aaPredicted RBP8.64□□□□□ -1.03
SS18-217ENST00000580958 RAB7AP51149 207 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 EFNA4P52798 201 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 TMEM33P57088 247 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 ZNF585BQ52M93 769 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 RPL39P5Q59GN2 51 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 WDR25Q64LD2 544 aaPredicted RBP8.64□□□□□ -1.03
SS18-217ENST00000580958 PRSS54Q6PEW0 395 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 TMEM65Q6PI78 240 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 HEPN1Q6WQI6 88 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 ZNF66Q6ZN08 573 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 ZNF546Q86UE3 836 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 FOXRED2Q8IWF2 684 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 DCUN1D4Q92564 292 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 HSD17B10Q99714 261 aaKnown RBP8.64□□□□□ -1.03
SS18-217ENST00000580958 RNF126Q9BV68 326 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 SLA2Q9H6Q3 261 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 NARFLQ9H6Q4 476 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 OR5AC2Q9NZP5 309 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 TNFSF18Q9UNG2 199 aa8.64□□□□□ -1.03
SS18-217ENST00000580958 LSM5Q9Y4Y9 91 aaKnown RBP8.64□□□□□ -1.03
SS18-217ENST00000580958 TET2Q6N021 2002 aaPredicted RBP8.64□□□□□ -1.03
SS18-217ENST00000580958 A0A0G2JRQ6 117 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 A1L4Q6 167 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 LINC00473A8K010 186 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 C17orf98A8MV24 154 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 F5H0A9 414 aaPredicted RBP8.63□□□□□ -1.03
SS18-217ENST00000580958 OVOL3O00110 214 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 PROP1O75360 226 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 LYL1P12980 280 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 RPA2P15927 270 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 EPHA1P21709 976 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 LINC00205P59089 165 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 ZNF816Q0VGE8 651 aaPredicted RBP8.63□□□□□ -1.03
SS18-217ENST00000580958 OPCMLQ14982 345 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 NMSQ5H8A3 153 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 THOC7Q6I9Y2 204 aaKnown RBP8.63□□□□□ -1.03
SS18-217ENST00000580958 C1orf229Q6ZS94 237 aaPredicted RBP8.63□□□□□ -1.03
SS18-217ENST00000580958 SPAG16Q8N0X2 631 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 LYG1Q8N1E2 194 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 OR4D5Q8NGN0 318 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 OR1S1Q8NH92 325 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 RNASE11Q8TAA1 199 aaKnown RBP8.63□□□□□ -1.03
SS18-217ENST00000580958 IGFBPL1Q8WX77 278 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 GPR146Q96CH1 333 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 SPIN2AQ99865 258 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 SPIN2BQ9BPZ2 258 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 GON7Q9BXV9 100 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 MFFQ9GZY8 342 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 PATZ1Q9HBE1 687 aaKnown RBP8.63□□□□□ -1.03
SS18-217ENST00000580958 LRRK2Q5S007 2527 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 WNK2Q9Y3S1 2297 aa8.63□□□□□ -1.03
SS18-217ENST00000580958 SAA2-SAA4A0A096LPE2 208 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 RNF222A6NCQ9 220 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 K7EPK0 472 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 RGS13O14921 159 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 KCNAB3O43448 404 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 RAMP3O60896 148 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 SNAPC5O75971 98 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 IGKV1-5P01602 117 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 MBPP02686 304 aaPredicted RBP8.62□□□□□ -1.03
SS18-217ENST00000580958 SAA2P0DJI9 122 aaPredicted RBP8.62□□□□□ -1.03
SS18-217ENST00000580958 COX6B1P14854 86 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 VDAC1P21796 283 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 S100A11P31949 105 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 DUTP33316 252 aaKnown RBP8.62□□□□□ -1.03
SS18-217ENST00000580958 AP2S1P53680 142 aaPredicted RBP8.62□□□□□ -1.03
SS18-217ENST00000580958 BRWD1-AS2P59051 145 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 SMCO1Q147U7 214 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 ESCO2Q56NI9 601 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 NCR3LG1Q68D85 454 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 SLC25A48Q6ZT89 311 aaKnown RBP8.62□□□□□ -1.03
SS18-217ENST00000580958 ODF3L1Q8IXM7 274 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 FAM71E2Q8N5Q1 922 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 TCTEX1D1Q8N7M0 179 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.62□□□□□ -1.03
SS18-217ENST00000580958 LSM10Q969L4 123 aaKnown RBP8.62□□□□□ -1.03
SS18-217ENST00000580958 RAB39BQ96DA2 213 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 CCL19Q99731 98 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 ARL6Q9H0F7 186 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 HEXA-AS1Q9H8Q6 139 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 ZNRD1Q9P1U0 126 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 GAB2Q9UQC2 676 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 RCL1Q9Y2P8 373 aaKnown RBP8.62□□□□□ -1.03
SS18-217ENST00000580958 UTP20O75691 2785 aaKnown RBP8.62□□□□□ -1.03
SS18-217ENST00000580958 CHD6Q8TD26 2715 aa8.62□□□□□ -1.03
SS18-217ENST00000580958 PIGBOS1A0A0B4J2F0 54 aa8.61□□□□□ -1.03
SS18-217ENST00000580958 A0A0D9SG52 128 aa8.61□□□□□ -1.03
SS18-217ENST00000580958 CLEC18AA5D8T8 446 aa8.61□□□□□ -1.03
SS18-217ENST00000580958 C22orf46C9J442 243 aa8.61□□□□□ -1.03
SS18-217ENST00000580958 RAB29O14966 203 aa8.61□□□□□ -1.03
SS18-217ENST00000580958 OR2F2O95006 317 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms