RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 TNFAIP8O95379 198 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 FCGR3AP08637 254 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 GSTP1P09211 210 aaKnown RBP6.4□□□□□ -1.38
VPS53-214ENST00000572607 OR5H8P0DN80 308 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 SLC2A2P11168 524 aaPredicted RBP6.4□□□□□ -1.38
VPS53-214ENST00000572607 HIST1H1DP16402 221 aaKnown RBP6.4□□□□□ -1.38
VPS53-214ENST00000572607 GNB3P16520 340 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 CD36P16671 472 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 MXD1Q05195 221 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 PLA2G7Q13093 441 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 PLGLAQ15195 96 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 MOGAT2Q3SYC2 334 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 SFXN4Q6P4A7 337 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 TEX38Q6PEX7 206 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 ZNF329Q86UD4 541 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 C1QL4Q86Z23 238 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 ODF3L1Q8IXM7 274 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 Q8N9W7 124 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 OR10J5Q8NHC4 309 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 ABHD14BQ96IU4 210 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 NOL4LQ96MY1 436 aaPredicted RBP6.4□□□□□ -1.38
VPS53-214ENST00000572607 GINS4Q9BRT9 223 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 C11orf54Q9H0W9 315 aaPredicted RBP6.4□□□□□ -1.38
VPS53-214ENST00000572607 OR51E2Q9H255 320 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 ZFP57Q9NU63 452 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 RDH8Q9NYR8 311 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 ZNF107Q9UII5 783 aaPredicted RBP6.4□□□□□ -1.38
VPS53-214ENST00000572607 LINC00527Q9UJ94 153 aa6.4□□□□□ -1.38
VPS53-214ENST00000572607 RBM7Q9Y580 266 aaKnown RBP6.4□□□□□ -1.38
VPS53-214ENST00000572607 A0A0B4J203 849 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 RAB27BO00194 218 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 BET1O15155 118 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 RBBP9O75884 186 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 DIRAS3O95661 229 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 APOA2P02652 100 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 SLC6A1P30531 599 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 SDC2P34741 201 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 GNG2P59768 71 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 RPL23AP62750 156 aaKnown RBP6.39□□□□□ -1.39
VPS53-214ENST00000572607 PITPNAQ00169 270 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 CBX3Q13185 183 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 PNLIPRP3Q17RR3 467 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 RPL39P5Q59GN2 51 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 CXorf66Q5JRM2 361 aaPredicted RBP6.39□□□□□ -1.39
VPS53-214ENST00000572607 IDNKQ5T6J7 187 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 LIN54Q6MZP7 749 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 C10orf99Q6UWK7 81 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 FAM131AQ6UXB0 335 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 Q6ZPA2 131 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 FAM71E2Q8N5Q1 922 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 TSPAN14Q8NG11 270 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 LGALS14Q8TCE9 139 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 PARP11Q9NR21 331 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 PLSCR3Q9NRY6 295 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 RNF150Q9ULK6 438 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 WASHC3Q9Y3C0 194 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 ETV7Q9Y603 341 aa6.39□□□□□ -1.39
VPS53-214ENST00000572607 G3V4G9 280 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 TMEM127O75204 238 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 HLA-DRB1P01911 266 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 TFAP2AP05549 437 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 ELANEP08246 267 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 CTXN2P0C2S0 81 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 OR8U9P0C7N5 309 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 GSTT2P0CG29 244 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 GSTT2BP0CG30 244 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 CT45A6P0DMU7 189 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 CT45A5P0DMU8 189 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 CT45A7P0DMV0 189 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 DTYMKP23919 212 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 F2RL1P55085 397 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 SCAND1P57086 179 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 SRSF7Q16629 238 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS53-214ENST00000572607 C5orf64Q2M2E5 130 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 CDNFQ49AH0 187 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 TCTEX1D4Q5JR98 221 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 GLDNQ6ZMI3 551 aaPredicted RBP6.38□□□□□ -1.39
VPS53-214ENST00000572607 CROCCP3Q8IVE0 287 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.38□□□□□ -1.39
VPS53-214ENST00000572607 KLHL30-AS1Q8NEE0 82 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 OR8U1Q8NH10 309 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 ABHD5Q8WTS1 349 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 DPF1Q92782 380 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 HSPB9Q9BQS6 159 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 AGMATQ9BSE5 352 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 CABLES2Q9BTV7 478 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 GPR61Q9BZJ8 451 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 PARP12Q9H0J9 701 aaKnown RBP6.38□□□□□ -1.39
VPS53-214ENST00000572607 RHBDL2Q9NX52 303 aa6.38□□□□□ -1.39
VPS53-214ENST00000572607 ZNF230Q9UIE0 474 aaPredicted RBP6.38□□□□□ -1.39
VPS53-214ENST00000572607 DNAH9Q9NYC9 4486 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 TRBV6-7A0A0A0MS04 114 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 IGKV1-6A0A0C4DH72 117 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 LINC01548A6NM66 108 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 H0YJW9 148 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 M0R1X1 148 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 RRHO14718 337 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 AIREO43918 545 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 SPDEFO95238 335 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 DUS4LO95620 317 aaKnown RBP6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms