RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 MRGPRGQ86SM5 289 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 ZNF251Q9BRH9 671 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 TIMM9Q9Y5J7 89 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 MAP1LC3B2A6NCE7 125 aa19.06■□□□□ 0.64
VPS53-211ENST00000571805 IGKV1D-33P01593 117 aa19.06■□□□□ 0.64
VPS53-211ENST00000571805 IGKV1-33P01594 117 aa19.06■□□□□ 0.64
VPS53-211ENST00000571805 CD55P08174 381 aa19.06■□□□□ 0.64
VPS53-211ENST00000571805 KITLGP21583 273 aa19.06■□□□□ 0.64
VPS53-211ENST00000571805 SRSF6Q13247 344 aaKnown RBP19.06■□□□□ 0.64
VPS53-211ENST00000571805 PMS2P11Q13670 270 aa19.06■□□□□ 0.64
VPS53-211ENST00000571805 RPP25LQ8N5L8 163 aaKnown RBP19.06■□□□□ 0.64
VPS53-211ENST00000571805 MAP1LC3BQ9GZQ8 125 aa19.06■□□□□ 0.64
VPS53-211ENST00000571805 CTNNBIP1Q9NSA3 81 aaPredicted RBP19.06■□□□□ 0.64
VPS53-211ENST00000571805 VAX2Q9UIW0 290 aa19.06■□□□□ 0.64
VPS53-211ENST00000571805 LOC400499M0QZD8 3231 aa19.06■□□□□ 0.64
VPS53-211ENST00000571805 GABRA2P47869 451 aa19.06■□□□□ 0.64
VPS53-211ENST00000571805 CATR1Q13166 79 aa19.06■□□□□ 0.64
VPS53-211ENST00000571805 C1orf162Q8NEQ5 155 aaPredicted RBP19.06■□□□□ 0.64
VPS53-211ENST00000571805 CLN8Q9UBY8 286 aa19.06■□□□□ 0.64
VPS53-211ENST00000571805 PMS2P5A8MQ11 134 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 CECR9P0C854 216 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 PNRC1Q12796 327 aaPredicted RBP19.05■□□□□ 0.64
VPS53-211ENST00000571805 NCMAPQ5T1S8 102 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 BTNL3Q6UXE8 466 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 UFSP2Q9NUQ7 469 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 FZR1Q9UM11 496 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 TIMM8AO60220 97 aaPredicted RBP19.05■□□□□ 0.64
VPS53-211ENST00000571805 HOXA5P20719 270 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 HOXC12P31275 282 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 PLA2G5P39877 138 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 COL10A1Q03692 680 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 BEND4Q6ZU67 534 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 OR13A1Q8NGR1 328 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 NINJ1Q92982 152 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 MSL2Q9HCI7 577 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 SDF2L1Q9HCN8 221 aa19.05■□□□□ 0.64
VPS53-211ENST00000571805 IFNL4K9M1U5 179 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 SSTR5P35346 364 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 FABP6P51161 128 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 ZNF674Q2M3X9 581 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 TPRX1Q8N7U7 411 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 LURAP1Q96LR2 239 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 TMEM242Q9NWH2 141 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 ZNF891A8MT65 544 aaPredicted RBP19.04■□□□□ 0.64
VPS53-211ENST00000571805 CEBPZOSA8MTT3 80 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 AQP7O14520 342 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 CLDN14O95500 239 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 FOXF2Q12947 444 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 ATP6V1FQ16864 119 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 IGFL2Q6UWQ7 119 aa19.04■□□□□ 0.64
VPS53-211ENST00000571805 OR5H1A6NKK0 313 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 RAB29O14966 203 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 TUBG1P23258 451 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 CD82P27701 267 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 ACSM6Q6P461 480 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 TCTEX1D1Q8N7M0 179 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 MRPL37Q9BZE1 423 aaKnown RBP19.03■□□□□ 0.64
VPS53-211ENST00000571805 NIT2Q9NQR4 276 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 TUBG2Q9NRH3 451 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 SLC39A9Q9NUM3 307 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 LINC00473A8K010 186 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 LINC00205P59089 165 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 LHX4Q969G2 390 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 TMPRSS5Q9H3S3 457 aa19.03■□□□□ 0.64
VPS53-211ENST00000571805 PTPRBP23467 1997 aa19.02■□□□□ 0.64
VPS53-211ENST00000571805 ZG16O60844 167 aa19.02■□□□□ 0.64
VPS53-211ENST00000571805 ZNF737O75373 536 aa19.02■□□□□ 0.64
VPS53-211ENST00000571805 CYB5R3P00387 301 aaPredicted RBP19.02■□□□□ 0.64
VPS53-211ENST00000571805 IGLV1-44P01699 117 aa19.02■□□□□ 0.64
VPS53-211ENST00000571805 RND2P52198 227 aa19.02■□□□□ 0.64
VPS53-211ENST00000571805 ZNF610Q8N9Z0 462 aa19.02■□□□□ 0.64
VPS53-211ENST00000571805 DTD1Q8TEA8 209 aa19.02■□□□□ 0.64
VPS53-211ENST00000571805 TMEM147Q9BVK8 224 aa19.02■□□□□ 0.64
VPS53-211ENST00000571805 GSN-AS1Q9NRJ2 163 aa19.02■□□□□ 0.64
VPS53-211ENST00000571805 CACNA1GO43497 2377 aa19.02■□□□□ 0.64
VPS53-211ENST00000571805 DOCK11Q5JSL3 2073 aa19.02■□□□□ 0.63
VPS53-211ENST00000571805 IGHV3-43A0A0B4J1X8 118 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 CYB5BO43169 146 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 YIF1AO95070 293 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 IFNA1P01562 189 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 IGHV3-43DP0DP04 118 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 HNF4GQ14541 408 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 SMIM21Q3B7S5 101 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 ZNF718Q3SXZ3 478 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 WDR25Q64LD2 544 aaPredicted RBP19.01■□□□□ 0.63
VPS53-211ENST00000571805 FAM180AQ6UWF9 173 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 CD177Q8N6Q3 437 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 ZDHHC16Q969W1 377 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 AGMATQ9BSE5 352 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 PLSCR4Q9NRQ2 329 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 DSPP15924 2871 aaKnown RBP19.01■□□□□ 0.63
VPS53-211ENST00000571805 CD81P60033 236 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 ZNF66Q6ZN08 573 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 RFESDQ8TAC1 157 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 DOK5Q9P104 306 aa19.01■□□□□ 0.63
VPS53-211ENST00000571805 SPENQ96T58 3664 aaKnown RBP19.01■□□□□ 0.63
VPS53-211ENST00000571805 A0A1B0GWJ7 208 aa19■□□□□ 0.63
VPS53-211ENST00000571805 IFITM10A6NMD0 228 aa19■□□□□ 0.63
VPS53-211ENST00000571805 PRR33A8MZF0 331 aa19■□□□□ 0.63
VPS53-211ENST00000571805 C15orf65H3BRN8 121 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms