RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CTXN2P0C2S0 81 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 PTHLHP12272 177 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 CNTFRP26992 372 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 MC5RP33032 325 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 RORCP51449 518 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 LINC00205P59089 165 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 ACTBP60709 375 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 C10orf99Q6UWK7 81 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 FAM131AQ6UXB0 335 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 GPR141Q7Z602 305 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 GVQW1Q8N7I0 195 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 C11orf44Q8N8P7 122 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 ZNF383Q8NA42 475 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 OR5AU1Q8NGC0 362 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 ZNF221Q9UK13 617 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 ANAPC10Q9UM13 185 aa10.25□□□□□ -0.77
VPS28-216ENST00000533806 FBXO24O75426 580 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 TUSC2O75896 110 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 HLA-DQB1P01920 261 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 APOA1P02647 267 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 RPL5P46777 297 aaKnown RBP10.24□□□□□ -0.77
VPS28-216ENST00000533806 GPR12P47775 334 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 TREML4Q6UXN2 200 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 GLDNQ6ZMI3 551 aaPredicted RBP10.24□□□□□ -0.77
VPS28-216ENST00000533806 CENPVQ7Z7K6 275 aaPredicted RBP10.24□□□□□ -0.77
VPS28-216ENST00000533806 DRAXINQ8NBI3 349 aaPredicted RBP10.24□□□□□ -0.77
VPS28-216ENST00000533806 ACOT12Q8WYK0 555 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 SNAPC3Q92966 411 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 NOL4LQ96MY1 436 aaPredicted RBP10.24□□□□□ -0.77
VPS28-216ENST00000533806 RNF5Q99942 180 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 CITED2Q99967 270 aaPredicted RBP10.24□□□□□ -0.77
VPS28-216ENST00000533806 HSPB9Q9BQS6 159 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 OR2D2Q9H210 308 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 SDHAF2Q9NX18 166 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 COMMD3Q9UBI1 195 aa10.24□□□□□ -0.77
VPS28-216ENST00000533806 TSPAN15O95858 294 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 IGLV2-14P01704 120 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 IGKV1-16P04430 117 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 ZNF182P17025 639 aaPredicted RBP10.23□□□□□ -0.77
VPS28-216ENST00000533806 TAS2R20P59543 309 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 SPCS2Q15005 226 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 MMDQ15546 238 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 C5orf64Q2M2E5 130 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 ARSJQ5FYB0 599 aaPredicted RBP10.23□□□□□ -0.77
VPS28-216ENST00000533806 C9orf152Q5JTZ5 239 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 SLC35E3Q7Z769 313 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 BEST4Q8NFU0 473 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 RASL11BQ9BPW5 248 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 GINS4Q9BRT9 223 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 ZNF107Q9UII5 783 aaPredicted RBP10.23□□□□□ -0.77
VPS28-216ENST00000533806 ZNF580Q9UK33 172 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 WASHC3Q9Y3C0 194 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 OR2W1Q9Y3N9 320 aa10.23□□□□□ -0.77
VPS28-216ENST00000533806 NOTCH1P46531 2555 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 M0R1X1 148 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 NBR2O15453 112 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 PEX14O75381 377 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 RBBP9O75884 186 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 HLA-DRB1P01911 266 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 IGF1P05019 195 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 NAT1P18440 290 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 ELK1P19419 428 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 NFYAP23511 347 aaPredicted RBP10.22□□□□□ -0.77
VPS28-216ENST00000533806 SOX6P35712 828 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 CBX5P45973 191 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 TMBIM6P55061 237 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 CFHR3Q02985 330 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 C2orf68Q2NKX9 166 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 TMEM69Q5SWH9 247 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 NDUFA11Q86Y39 141 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 STPG2Q8N412 459 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 CHPT1Q8WUD6 406 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 DDB2Q92466 427 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 BCL7BQ9BQE9 202 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 MMP27Q9H306 513 aa10.22□□□□□ -0.77
VPS28-216ENST00000533806 IGHV7-81A0A0B4J1V7 117 aa10.21□□□□□ -0.77
VPS28-216ENST00000533806 IGKV1D-13A0A0B4J2D9 117 aa10.21□□□□□ -0.77
VPS28-216ENST00000533806 AP4M1O00189 453 aa10.21□□□□□ -0.77
VPS28-216ENST00000533806 KCNAB3O43448 404 aa10.21□□□□□ -0.77
VPS28-216ENST00000533806 HPGDSO60760 199 aa10.21□□□□□ -0.77
VPS28-216ENST00000533806 IGKV1-13P0DP09 117 aa10.21□□□□□ -0.77
VPS28-216ENST00000533806 EIF4EBP1Q13541 118 aaPredicted RBP10.21□□□□□ -0.77
VPS28-216ENST00000533806 PDPNQ86YL7 162 aa10.21□□□□□ -0.77
VPS28-216ENST00000533806 CLVS1Q8IUQ0 354 aaPredicted RBP10.21□□□□□ -0.77
VPS28-216ENST00000533806 OR5AP2Q8NGF4 316 aa10.21□□□□□ -0.77
VPS28-216ENST00000533806 GPX8Q8TED1 209 aa10.21□□□□□ -0.77
VPS28-216ENST00000533806 RAB2BQ8WUD1 216 aa10.21□□□□□ -0.77
VPS28-216ENST00000533806 LINC00527Q9UJ94 153 aa10.21□□□□□ -0.77
VPS28-216ENST00000533806 PSMB11A5LHX3 300 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 LINC00473A8K010 186 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 FCN1O00602 326 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 RRHO14718 337 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 IGLV2-23P01705 113 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 CSF1P09603 554 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 DUTP33316 252 aaKnown RBP10.2□□□□□ -0.78
VPS28-216ENST00000533806 LUMP51884 338 aaPredicted RBP10.2□□□□□ -0.78
VPS28-216ENST00000533806 TAGLNQ01995 201 aaKnown RBP10.2□□□□□ -0.78
VPS28-216ENST00000533806 PSG5Q15238 335 aa10.2□□□□□ -0.78
VPS28-216ENST00000533806 ZNF660Q6AZW8 331 aaPredicted RBP10.2□□□□□ -0.78
VPS28-216ENST00000533806 LIN54Q6MZP7 749 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms