RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 OR2M4Q96R27 311 aa2.38□□□□□ -2.03
VPS41-210ENST00000462429 TSNAXQ99598 290 aaKnown RBP2.38□□□□□ -2.03
VPS41-210ENST00000462429 SFXN3Q9BWM7 321 aa2.38□□□□□ -2.03
VPS41-210ENST00000462429 MS4A8Q9BY19 250 aa2.38□□□□□ -2.03
VPS41-210ENST00000462429 TRIM4Q9C037 500 aa2.38□□□□□ -2.03
VPS41-210ENST00000462429 EXOSC4Q9NPD3 245 aaKnown RBP2.38□□□□□ -2.03
VPS41-210ENST00000462429 TAS2R5Q9NYW4 299 aa2.38□□□□□ -2.03
VPS41-210ENST00000462429 RSL24D1Q9UHA3 163 aaKnown RBP2.38□□□□□ -2.03
VPS41-210ENST00000462429 POFUT2Q9Y2G5 429 aa2.38□□□□□ -2.03
VPS41-210ENST00000462429 SAMHD1Q9Y3Z3 626 aaKnown RBP2.38□□□□□ -2.03
VPS41-210ENST00000462429 SVILO95425 2214 aa2.38□□□□□ -2.03
VPS41-210ENST00000462429 PLXNA2O75051 1894 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 ANKRD20A5PA0PJZ0 165 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 ARRDC5A6NEK1 342 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 COLCA2A8K830 154 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 M0QX08 132 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 PSPHP1O15172 72 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 SLC31A1O15431 190 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 GATBO75879 557 aaKnown RBP2.37□□□□□ -2.03
VPS41-210ENST00000462429 GADD45GO95257 159 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 IGKV1D-16P01601 117 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 IGLV3-19P01714 112 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 IL3P08700 152 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 IFI6P09912 130 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 CD28P10747 220 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 HIST1H1TP22492 207 aaPredicted RBP2.37□□□□□ -2.03
VPS41-210ENST00000462429 TGFBR1P36897 503 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 ACTR1BP42025 376 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 GPR4P46093 362 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 CDK9P50750 372 aaKnown RBP2.37□□□□□ -2.03
VPS41-210ENST00000462429 TMBIM6P55061 237 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 OR4D2P58180 307 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 UBE2KP61086 200 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 HBA1P69905 142 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 PSPHP78330 225 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 REEP5Q00765 189 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 SLAMF1Q13291 335 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 HTR4Q13639 388 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 C1DQ13901 141 aaKnown RBP2.37□□□□□ -2.03
VPS41-210ENST00000462429 GPR176Q14439 515 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 ZNHIT3Q15649 155 aaPredicted RBP2.37□□□□□ -2.03
VPS41-210ENST00000462429 TNXAQ16473 311 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 GUSBP11Q6P575 273 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 CASP12Q6UXS9 341 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 LINC00299Q6ZSB3 139 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 RBM45Q8IUH3 476 aaKnown RBP2.37□□□□□ -2.03
VPS41-210ENST00000462429 SYS1Q8N2H4 156 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 RNF182Q8N6D2 247 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 ZNF615Q8N8J6 731 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 TSTD1Q8NFU3 115 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 OR4E2Q8NGC2 313 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 OR9Q1Q8NGQ5 310 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 RAB2BQ8WUD1 216 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 RORBQ92753 470 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 DOK1Q99704 481 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 SCRT1Q9BWW7 348 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 EBPLQ9BY08 206 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 YIPF3Q9GZM5 350 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 NDEL1Q9GZM8 345 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 SDHAF2Q9NX18 166 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 CFL2Q9Y281 166 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 WIF1Q9Y5W5 379 aa2.37□□□□□ -2.03
VPS41-210ENST00000462429 ZFC3H1O60293 1989 aaKnown RBP2.37□□□□□ -2.03
VPS41-210ENST00000462429 PTPRSQ13332 1948 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 TICRRQ7Z2Z1 1910 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 PLXNB3Q9ULL4 1909 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 CENPFP49454 3210 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 PDE4DIPQ5VU43 2346 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 MYO9BQ13459 2157 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 PCNTO95613 3336 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 MYO7AQ13402 2215 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 IGLV2-18A0A075B6J9 118 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 LOC102724200A0A096LPH7 203 aaPredicted RBP2.36□□□□□ -2.03
VPS41-210ENST00000462429 A0A0J9YY10 115 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 SPTY2D1-AS1A0A0U1RR47 76 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 SPRR5A0A1B0GTR4 108 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 PNMA8CA0A1B0GUJ8 204 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 EFCAB10A6NFE3 127 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 FAM25EA8MYX2 175 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 FAAHO00519 579 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 SLC22A1O15245 554 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 ACOX3O15254 700 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 RRP8O43159 456 aaKnown RBP2.36□□□□□ -2.03
VPS41-210ENST00000462429 NDUFS5O43920 106 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 SCN2BO60939 215 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 RBBP9O75884 186 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 RCBTB2O95199 551 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 SNAP29O95721 258 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 IL4P05112 153 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 CRHBPP24387 322 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 CA5AP35218 305 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 CDKN2CP42773 168 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 RANBP1P43487 201 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 RGS6P49758 472 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 GZMMP51124 257 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 COPZ1P61923 177 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 PPP1CAP62136 330 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 BTN3A2P78410 334 aa2.36□□□□□ -2.03
VPS41-210ENST00000462429 KRR1Q13601 381 aaKnown RBP2.36□□□□□ -2.03
VPS41-210ENST00000462429 FAM53BQ14153 422 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms