RNA–Protein interactions for RNA: ENST00000458610.6

CD28-203, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 705 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-203ENST00000458610 Q8N9W7 124 aa12.82□□□□□ -0.36
CD28-203ENST00000458610 OR4X2Q8NGF9 303 aa12.82□□□□□ -0.36
CD28-203ENST00000458610 OR5AN1Q8NGI8 311 aa12.82□□□□□ -0.36
CD28-203ENST00000458610 PLSCR3Q9NRY6 295 aa12.82□□□□□ -0.36
CD28-203ENST00000458610 COMMD3Q9UBI1 195 aa12.82□□□□□ -0.36
CD28-203ENST00000458610 WASHC3Q9Y3C0 194 aa12.82□□□□□ -0.36
CD28-203ENST00000458610 TENM1Q9UKZ4 2725 aa12.82□□□□□ -0.36
CD28-203ENST00000458610 SH2D7A6NKC9 451 aaPredicted RBP12.81□□□□□ -0.36
CD28-203ENST00000458610 AP4M1O00189 453 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 SSX5O60225 188 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 APOA1P02647 267 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 APOA2P02652 100 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 OPN1MWP04001 364 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 OPN1MW2P0DN77 364 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 OPN1MW3P0DN78 364 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 ZNF182P17025 639 aaPredicted RBP12.81□□□□□ -0.36
CD28-203ENST00000458610 SOX6P35712 828 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 RPL5P46777 297 aaKnown RBP12.81□□□□□ -0.36
CD28-203ENST00000458610 ARPC4P59998 168 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 CBX3Q13185 183 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 TMEM95Q3KNT9 176 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 HOGA1Q86XE5 327 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 NDUFA11Q86Y39 141 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 C11orf44Q8N8P7 122 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 BEST4Q8NFU0 473 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 WIPF2Q8TF74 440 aaPredicted RBP12.81□□□□□ -0.36
CD28-203ENST00000458610 OR2D2Q9H210 308 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 MMP27Q9H306 513 aa12.81□□□□□ -0.36
CD28-203ENST00000458610 PSMB11A5LHX3 300 aa12.8□□□□□ -0.36
CD28-203ENST00000458610 H0YJW9 148 aa12.8□□□□□ -0.36
CD28-203ENST00000458610 M0R1X1 148 aa12.8□□□□□ -0.36
CD28-203ENST00000458610 NBR2O15453 112 aa12.8□□□□□ -0.36
CD28-203ENST00000458610 LUMP51884 338 aaPredicted RBP12.8□□□□□ -0.36
CD28-203ENST00000458610 F2RL1P55085 397 aa12.8□□□□□ -0.36
CD28-203ENST00000458610 FAM131AQ6UXB0 335 aa12.8□□□□□ -0.36
CD28-203ENST00000458610 COMMD1Q8N668 190 aa12.8□□□□□ -0.36
CD28-203ENST00000458610 NPBQ8NG41 125 aa12.8□□□□□ -0.36
CD28-203ENST00000458610 ADTRPQ96IZ2 230 aa12.8□□□□□ -0.36
CD28-203ENST00000458610 BCL7BQ9BQE9 202 aa12.8□□□□□ -0.36
CD28-203ENST00000458610 NAA50Q9GZZ1 169 aaKnown RBP12.8□□□□□ -0.36
CD28-203ENST00000458610 OR2W1Q9Y3N9 320 aa12.8□□□□□ -0.36
CD28-203ENST00000458610 IGKV1D-8A0A087WSZ0 117 aa12.79□□□□□ -0.36
CD28-203ENST00000458610 NOL3O60936 208 aaKnown RBP12.79□□□□□ -0.36
CD28-203ENST00000458610 RRASP10301 218 aa12.79□□□□□ -0.36
CD28-203ENST00000458610 CD28P10747 220 aa12.79□□□□□ -0.36
CD28-203ENST00000458610 PRSS3P35030 304 aa12.79□□□□□ -0.36
CD28-203ENST00000458610 THBS3P49746 956 aa12.79□□□□□ -0.36
CD28-203ENST00000458610 TMBIM6P55061 237 aa12.79□□□□□ -0.36
CD28-203ENST00000458610 LIN54Q6MZP7 749 aa12.79□□□□□ -0.36
CD28-203ENST00000458610 PDPNQ86YL7 162 aa12.79□□□□□ -0.36
CD28-203ENST00000458610 FAM71E2Q8N5Q1 922 aa12.79□□□□□ -0.36
CD28-203ENST00000458610 RAB2BQ8WUD1 216 aa12.79□□□□□ -0.36
CD28-203ENST00000458610 FLYWCH2Q96CP2 140 aaKnown RBP12.79□□□□□ -0.36
CD28-203ENST00000458610 TSNAXQ99598 290 aaKnown RBP12.79□□□□□ -0.36
CD28-203ENST00000458610 IFT46Q9NQC8 304 aa12.79□□□□□ -0.36
CD28-203ENST00000458610 NECAP2Q9NVZ3 263 aa12.79□□□□□ -0.36
CD28-203ENST00000458610 ZNF107Q9UII5 783 aaPredicted RBP12.79□□□□□ -0.36
CD28-203ENST00000458610 TCRBV4S1A1TA0A5B7 111 aa12.78□□□□□ -0.36
CD28-203ENST00000458610 PROP1O75360 226 aa12.78□□□□□ -0.36
CD28-203ENST00000458610 TAS2R20P59543 309 aa12.78□□□□□ -0.36
CD28-203ENST00000458610 CD83Q01151 205 aa12.78□□□□□ -0.36
CD28-203ENST00000458610 C5orf64Q2M2E5 130 aa12.78□□□□□ -0.36
CD28-203ENST00000458610 GLDNQ6ZMI3 551 aaPredicted RBP12.78□□□□□ -0.36
CD28-203ENST00000458610 CLVS1Q8IUQ0 354 aaPredicted RBP12.78□□□□□ -0.36
CD28-203ENST00000458610 DRAXINQ8NBI3 349 aaPredicted RBP12.78□□□□□ -0.36
CD28-203ENST00000458610 OR4F17Q8NGA8 305 aa12.78□□□□□ -0.36
CD28-203ENST00000458610 OR4F4Q96R69 305 aa12.78□□□□□ -0.36
CD28-203ENST00000458610 CITED2Q99967 270 aaPredicted RBP12.78□□□□□ -0.36
CD28-203ENST00000458610 SDHAF2Q9NX18 166 aa12.78□□□□□ -0.36
CD28-203ENST00000458610 SCOCQ9UIL1 159 aa12.78□□□□□ -0.36
CD28-203ENST00000458610 TSSC4Q9Y5U2 329 aaPredicted RBP12.78□□□□□ -0.36
CD28-203ENST00000458610 NDUFA3O95167 84 aa12.77□□□□□ -0.37
CD28-203ENST00000458610 HLA-DRB1P01911 266 aa12.77□□□□□ -0.37
CD28-203ENST00000458610 HLA-DQB1P01920 261 aa12.77□□□□□ -0.37
CD28-203ENST00000458610 OR5H8P0DN80 308 aa12.77□□□□□ -0.37
CD28-203ENST00000458610 LGALS7P47929 136 aa12.77□□□□□ -0.37
CD28-203ENST00000458610 RPS16P62249 146 aaKnown RBP12.77□□□□□ -0.37
CD28-203ENST00000458610 PLGLAQ15195 96 aa12.77□□□□□ -0.37
CD28-203ENST00000458610 RTL8BQ17RB0 113 aa12.77□□□□□ -0.37
CD28-203ENST00000458610 STPG2Q8N412 459 aa12.77□□□□□ -0.37
CD28-203ENST00000458610 ZNF383Q8NA42 475 aa12.77□□□□□ -0.37
CD28-203ENST00000458610 C15orf40Q8WUR7 153 aa12.77□□□□□ -0.37
CD28-203ENST00000458610 SLC35D1Q9NTN3 355 aa12.77□□□□□ -0.37
CD28-203ENST00000458610 ZNF580Q9UK33 172 aa12.77□□□□□ -0.37
CD28-203ENST00000458610 MRPS7Q9Y2R9 242 aaKnown RBP12.77□□□□□ -0.37
CD28-203ENST00000458610 FAM25AB3EWG3 89 aa12.76□□□□□ -0.37
CD28-203ENST00000458610 FAM25CB3EWG5 89 aa12.76□□□□□ -0.37
CD28-203ENST00000458610 FAM25GB3EWG6 89 aa12.76□□□□□ -0.37
CD28-203ENST00000458610 RRHO14718 337 aa12.76□□□□□ -0.37
CD28-203ENST00000458610 TPPPO94811 219 aa12.76□□□□□ -0.37
CD28-203ENST00000458610 SPDEFO95238 335 aa12.76□□□□□ -0.37
CD28-203ENST00000458610 EIF4EP06730 217 aaKnown RBP12.76□□□□□ -0.37
CD28-203ENST00000458610 VDAC1P21796 283 aa12.76□□□□□ -0.37
CD28-203ENST00000458610 NFYAP23511 347 aaPredicted RBP12.76□□□□□ -0.37
CD28-203ENST00000458610 NSUN5P1Q3KNT7 163 aa12.76□□□□□ -0.37
CD28-203ENST00000458610 TEX38Q6PEX7 206 aa12.76□□□□□ -0.37
CD28-203ENST00000458610 ZNF645Q8N7E2 425 aa12.76□□□□□ -0.37
CD28-203ENST00000458610 GVQW1Q8N7I0 195 aa12.76□□□□□ -0.37
CD28-203ENST00000458610 OR5AP2Q8NGF4 316 aa12.76□□□□□ -0.37
CD28-203ENST00000458610 RITA1Q96K30 269 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms