RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 CTF1Q16619 201 aa9.09□□□□□ -0.95
COL28A1-203ENST00000435823 TMEM69Q5SWH9 247 aa9.09□□□□□ -0.95
COL28A1-203ENST00000435823 CNIH2Q6PI25 160 aa9.09□□□□□ -0.95
COL28A1-203ENST00000435823 SLC35E3Q7Z769 313 aa9.09□□□□□ -0.95
COL28A1-203ENST00000435823 FOXRED2Q8IWF2 684 aa9.09□□□□□ -0.95
COL28A1-203ENST00000435823 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.09□□□□□ -0.95
COL28A1-203ENST00000435823 OR8U1Q8NH10 309 aa9.09□□□□□ -0.95
COL28A1-203ENST00000435823 AP3S1Q92572 193 aa9.09□□□□□ -0.95
COL28A1-203ENST00000435823 CMTM3Q96MX0 182 aa9.09□□□□□ -0.95
COL28A1-203ENST00000435823 NAA50Q9GZZ1 169 aaKnown RBP9.09□□□□□ -0.95
COL28A1-203ENST00000435823 OR2D2Q9H210 308 aa9.09□□□□□ -0.95
COL28A1-203ENST00000435823 AUNIPQ9H7T9 357 aa9.09□□□□□ -0.95
COL28A1-203ENST00000435823 COMMD3Q9UBI1 195 aa9.09□□□□□ -0.95
COL28A1-203ENST00000435823 ANXA10Q9UJ72 324 aa9.09□□□□□ -0.95
COL28A1-203ENST00000435823 TET2Q6N021 2002 aaPredicted RBP9.09□□□□□ -0.95
COL28A1-203ENST00000435823 SMIM31A0A1B0GVY4 71 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 H7C2Y5 167 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 KCNAB3O43448 404 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 APOA2P02652 100 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 CSF1P09603 554 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 ARPC4P59998 168 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 MZT2AQ6P582 158 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 FAM131AQ6UXB0 335 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 GLDNQ6ZMI3 551 aaPredicted RBP9.08□□□□□ -0.96
COL28A1-203ENST00000435823 H1FOOQ8IZA3 346 aaPredicted RBP9.08□□□□□ -0.96
COL28A1-203ENST00000435823 Q8N9W7 124 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 BEST4Q8NFU0 473 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 OR5AU1Q8NGC0 362 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 OR4X2Q8NGF9 303 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 PLSCR3Q9NRY6 295 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 KIAA1456Q9P272 454 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 GAB2Q9UQC2 676 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 WASHC3Q9Y3C0 194 aa9.08□□□□□ -0.96
COL28A1-203ENST00000435823 PSMB11A5LHX3 300 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 H0YJW9 148 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 M0R1X1 148 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 NBR2O15453 112 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 NOL3O60936 208 aaKnown RBP9.07□□□□□ -0.96
COL28A1-203ENST00000435823 RBBP9O75884 186 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 IGHG2P01859 326 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 APOA1P02647 267 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 CD28P10747 220 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 ZNF182P17025 639 aaPredicted RBP9.07□□□□□ -0.96
COL28A1-203ENST00000435823 SOX6P35712 828 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 RPL5P46777 297 aaKnown RBP9.07□□□□□ -0.96
COL28A1-203ENST00000435823 F2RL1P55085 397 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 TAS2R20P59543 309 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 SLC35B1P78383 322 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 HOGA1Q86XE5 327 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 CLVS1Q8IUQ0 354 aaPredicted RBP9.07□□□□□ -0.96
COL28A1-203ENST00000435823 FAM71E2Q8N5Q1 922 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 DRAXINQ8NBI3 349 aaPredicted RBP9.07□□□□□ -0.96
COL28A1-203ENST00000435823 OR5AN1Q8NGI8 311 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 WIPF2Q8TF74 440 aaPredicted RBP9.07□□□□□ -0.96
COL28A1-203ENST00000435823 CHPT1Q8WUD6 406 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 MMP27Q9H306 513 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 IFT46Q9NQC8 304 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 FBN3Q75N90 2809 aa9.07□□□□□ -0.96
COL28A1-203ENST00000435823 AP4M1O00189 453 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 OPN1MWP04001 364 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 EIF4EP06730 217 aaKnown RBP9.06□□□□□ -0.96
COL28A1-203ENST00000435823 OPN1MW2P0DN77 364 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 OPN1MW3P0DN78 364 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 PTHLHP12272 177 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 NFYAP23511 347 aaPredicted RBP9.06□□□□□ -0.96
COL28A1-203ENST00000435823 LUMP51884 338 aaPredicted RBP9.06□□□□□ -0.96
COL28A1-203ENST00000435823 CBX3Q13185 183 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 NSUN5P1Q3KNT7 163 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 NDUFA11Q86Y39 141 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 PDPNQ86YL7 162 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 GVQW1Q8N7I0 195 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 NPBQ8NG41 125 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 RAB2BQ8WUD1 216 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 RBMXL1Q96E39 390 aaKnown RBP9.06□□□□□ -0.96
COL28A1-203ENST00000435823 RNF5Q99942 180 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 BCL7BQ9BQE9 202 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 GON7Q9BXV9 100 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 SDHAF2Q9NX18 166 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 ZNF107Q9UII5 783 aaPredicted RBP9.06□□□□□ -0.96
COL28A1-203ENST00000435823 SCOCQ9UIL1 159 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 OR2W1Q9Y3N9 320 aa9.06□□□□□ -0.96
COL28A1-203ENST00000435823 TCRBV4S1A1TA0A5B7 111 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 FAM25AB3EWG3 89 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 FAM25CB3EWG5 89 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 FAM25GB3EWG6 89 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 J3QRK9 145 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 PROP1O75360 226 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 SLC22A5O76082 557 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 NDUFA3O95167 84 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 TSPAN15O95858 294 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 CNTFRP26992 372 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 PRSS3P35030 304 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 THBS3P49746 956 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 TMBIM6P55061 237 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 TAGLNQ01995 201 aaKnown RBP9.05□□□□□ -0.96
COL28A1-203ENST00000435823 PLGLAQ15195 96 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 C5orf64Q2M2E5 130 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 STPG2Q8N412 459 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 ZNF645Q8N7E2 425 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 ZNF383Q8NA42 475 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms