RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 CLEC2LP0C7M8 214 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 GSTT2P0CG29 244 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 GSTT2BP0CG30 244 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 SNRPBP14678 240 aaKnown RBP12.78□□□□□ -0.36
LSM1-201ENST00000311351 VDAC1P21796 283 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 THBS3P49746 956 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 NDPQ00604 133 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 CXorf66Q5JRM2 361 aaPredicted RBP12.78□□□□□ -0.36
LSM1-201ENST00000311351 FOXB2Q5VYV0 432 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 SFXN4Q6P4A7 337 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 MRPL41Q8IXM3 137 aaKnown RBP12.78□□□□□ -0.36
LSM1-201ENST00000311351 LGALS14Q8TCE9 139 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 KCTD7Q96MP8 289 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 GON7Q9BXV9 100 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 PARP11Q9NR21 331 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 ZFP57Q9NU63 452 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 PLA2G2EQ9NZK7 142 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 KIAA1456Q9P272 454 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 WASHC3Q9Y3C0 194 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 WSB1Q9Y6I7 421 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 A0A087WXM4 84 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 LOC100506127A0A0U1RQW1 187 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 IGF1P05019 195 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 SDC2P34741 201 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 MXD1Q05195 221 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 FOXE3Q13461 319 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 ARFRP1Q13795 201 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 KIR2DS1Q14954 304 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 DEFB136Q30KP8 78 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 ZNF695Q8IW36 515 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 NPBQ8NG41 125 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 OR5AN1Q8NGI8 311 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 OR51J1Q9H342 316 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 FBXL15Q9H469 300 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 AURKAIP1Q9NWT8 199 aaPredicted RBP12.77□□□□□ -0.37
LSM1-201ENST00000311351 ZNF221Q9UK13 617 aa12.77□□□□□ -0.37
LSM1-201ENST00000311351 IGKV1D-8A0A087WSZ0 117 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 G3V318 75 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 M0R1X1 148 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 IGHG4P01861 327 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 CD36P16671 472 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 SERPINB10P48595 397 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 TPRA1Q86W33 373 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 ZNF383Q8NA42 475 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 TSPAN14Q8NG11 270 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 C5orf30Q96GV9 206 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 RCC1LQ96I51 464 aaKnown RBP12.76□□□□□ -0.37
LSM1-201ENST00000311351 RAX2Q96IS3 184 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 CENPOQ9BU64 300 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 OR2D2Q9H210 308 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 NECAP2Q9NVZ3 263 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 ZNF580Q9UK33 172 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 FBXO7Q9Y3I1 522 aa12.76□□□□□ -0.37
LSM1-201ENST00000311351 TRBV6-7A0A0A0MS04 114 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 RRHO14718 337 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 ELANEP08246 267 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 GSTP1P09211 210 aaKnown RBP12.75□□□□□ -0.37
LSM1-201ENST00000311351 OR8U9P0C7N5 309 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 PSMB8P28062 276 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 TALDO1P37837 337 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 PLGLAQ15195 96 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 CDNFQ49AH0 187 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 LIN54Q6MZP7 749 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 RNF152Q8N8N0 203 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 OR8U1Q8NH10 309 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 OR10J5Q8NHC4 309 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 NUDCD2Q8WVJ2 157 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 P2RX4Q99571 388 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 TOLLIPQ9H0E2 274 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 GHITMQ9H3K2 345 aa12.75□□□□□ -0.37
LSM1-201ENST00000311351 TRAV41A0A0B4J266 112 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 TMEM235A6NFC5 223 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 IGKV1-16P04430 117 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 TFAP2AP05549 437 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 OR5H8P0DN80 308 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 PPIFP30405 207 aaKnown RBP12.74□□□□□ -0.37
LSM1-201ENST00000311351 SLC6A1P30531 599 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 MC5RP33032 325 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 MYCNOSP40205 109 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 ECSCRQ19T08 205 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 TIMM50Q3ZCQ8 353 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 OR5H6Q8NGV6 325 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 GINS4Q9BRT9 223 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.74□□□□□ -0.37
LSM1-201ENST00000311351 TPSG1Q9NRR2 321 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 RHBDL2Q9NX52 303 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 GAB2Q9UQC2 676 aa12.74□□□□□ -0.37
LSM1-201ENST00000311351 FCN1O00602 326 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 RBBP9O75884 186 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 APOA2P02652 100 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 HOXD3P31249 432 aaPredicted RBP12.73□□□□□ -0.37
LSM1-201ENST00000311351 TGFBR1P36897 503 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 RAB25P57735 213 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 CX3CL1P78423 397 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 PSG5Q15238 335 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 Q6ZS49 121 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 REC114Q7Z4M0 266 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.73□□□□□ -0.37
LSM1-201ENST00000311351 MRAPQ8TCY5 172 aa12.73□□□□□ -0.37
LSM1-201ENST00000311351 SLC25A38Q96DW6 304 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms