RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 RITA1Q96K30 269 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 HSPB9Q9BQS6 159 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 TXNL4BQ9NX01 149 aaKnown RBP12.35□□□□□ -0.43
VPS39-203ENST00000561797 PIPOXQ9P0Z9 390 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 MGAT4AQ9UM21 535 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 STUB1Q9UNE7 303 aa12.35□□□□□ -0.43
VPS39-203ENST00000561797 RRP15Q9Y3B9 282 aaKnown RBP12.35□□□□□ -0.43
VPS39-203ENST00000561797 AP4M1O00189 453 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 RAB29O14966 203 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 PRB2P02812 416 aaPredicted RBP12.34□□□□□ -0.43
VPS39-203ENST00000561797 GADD45AP24522 165 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 CNTFRP26992 372 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 SOX6P35712 828 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 ACTBP60709 375 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 ZNF773Q6PK81 442 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 FAM71E2Q8N5Q1 922 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 OR10R2Q8NGX6 335 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 ZNF251Q9BRH9 671 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 C11orf54Q9H0W9 315 aaPredicted RBP12.34□□□□□ -0.43
VPS39-203ENST00000561797 RNF150Q9ULK6 438 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 SSR3Q9UNL2 185 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 KCNK7Q9Y2U2 307 aa12.34□□□□□ -0.43
VPS39-203ENST00000561797 TRDCB7Z8K6 153 aa12.33□□□□□ -0.44
VPS39-203ENST00000561797 GNB3P16520 340 aa12.33□□□□□ -0.44
VPS39-203ENST00000561797 RAB6AP20340 208 aa12.33□□□□□ -0.44
VPS39-203ENST00000561797 FGF9P31371 208 aaPredicted RBP12.33□□□□□ -0.44
VPS39-203ENST00000561797 RPL23AP62750 156 aaKnown RBP12.33□□□□□ -0.44
VPS39-203ENST00000561797 FAM131AQ6UXB0 335 aa12.33□□□□□ -0.44
VPS39-203ENST00000561797 GLDNQ6ZMI3 551 aaPredicted RBP12.33□□□□□ -0.44
VPS39-203ENST00000561797 C18orf65Q6ZTR6 163 aa12.33□□□□□ -0.44
VPS39-203ENST00000561797 ATG5Q9H1Y0 275 aa12.33□□□□□ -0.44
VPS39-203ENST00000561797 OR51E2Q9H255 320 aa12.33□□□□□ -0.44
VPS39-203ENST00000561797 IGKV1-6A0A0C4DH72 117 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 METTL21EPA6NDL7 271 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 NUDT19A8MXV4 375 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 RAB27BO00194 218 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 CT45A6P0DMU7 189 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 CT45A5P0DMU8 189 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 CT45A7P0DMV0 189 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 IGLL1P15814 213 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 NEDD8Q15843 81 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 PNLIPRP3Q17RR3 467 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 FAM71F2Q6NXP2 309 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 TEX38Q6PEX7 206 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 LCNL1Q6ZST4 164 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 COMMD1Q8N668 190 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 EDARADDQ8WWZ3 215 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 MAFIPQ8WZ33 124 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 PHF21AQ96BD5 680 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 GON7Q9BXV9 100 aa12.32□□□□□ -0.44
VPS39-203ENST00000561797 ZNF107Q9UII5 783 aaPredicted RBP12.32□□□□□ -0.44
VPS39-203ENST00000561797 NOTOA8MTQ0 251 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 H7C2Y5 167 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 MFNGO00587 321 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 ITGB1BP1O14713 200 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 NBR2O15453 112 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 RRP9O43818 475 aaKnown RBP12.31□□□□□ -0.44
VPS39-203ENST00000561797 FCGR3AP08637 254 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 HIST1H1DP16402 221 aaKnown RBP12.31□□□□□ -0.44
VPS39-203ENST00000561797 ARFRP1Q13795 201 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 KPRPQ5T749 579 aaPredicted RBP12.31□□□□□ -0.44
VPS39-203ENST00000561797 C8orf86Q6ZUL3 223 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 TPRA1Q86W33 373 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 KLHL30-AS1Q8NEE0 82 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 CHCHD6Q9BRQ6 235 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 AGMATQ9BSE5 352 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 RNF167Q9H6Y7 350 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 ZFP57Q9NU63 452 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 RDH8Q9NYR8 311 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 ZNF230Q9UIE0 474 aaPredicted RBP12.31□□□□□ -0.44
VPS39-203ENST00000561797 DAPK2Q9UIK4 370 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 ZNF221Q9UK13 617 aa12.31□□□□□ -0.44
VPS39-203ENST00000561797 NOTCH3Q9UM47 2321 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 BET1O15155 118 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 FABP7O15540 132 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 RPLP1P05386 114 aaKnown RBP12.3□□□□□ -0.44
VPS39-203ENST00000561797 GSTT2P0CG29 244 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 GSTT2BP0CG30 244 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 VDAC1P21796 283 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 SDC2P34741 201 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 MXD1Q05195 221 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 IGSF11Q5DX21 431 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 DRAXINQ8NBI3 349 aaPredicted RBP12.3□□□□□ -0.44
VPS39-203ENST00000561797 WFDC9Q8NEX5 89 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 OR4A4PQ8NGN8 299 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 PTX4Q96A99 478 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 GHITMQ9H3K2 345 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 KIAA1456Q9P272 454 aa12.3□□□□□ -0.44
VPS39-203ENST00000561797 ELF5Q9UKW6 265 aaPredicted RBP12.3□□□□□ -0.44
VPS39-203ENST00000561797 LOC100506127A0A0U1RQW1 187 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 H0YJW9 148 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 PROP1O75360 226 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 GSTP1P09211 210 aaKnown RBP12.29□□□□□ -0.44
VPS39-203ENST00000561797 CLEC2LP0C7M8 214 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 SNRPBP14678 240 aaKnown RBP12.29□□□□□ -0.44
VPS39-203ENST00000561797 MC5RP33032 325 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 TALDO1P37837 337 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 LINC00205P59089 165 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 KIR2DS1Q14954 304 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 C5orf64Q2M2E5 130 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms