RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 BCL7BQ9BQE9 202 aa11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 GINS4Q9BRT9 223 aa11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 ABCG5Q9H222 651 aa11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 LIN7CQ9NUP9 197 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 RDH8Q9NYR8 311 aa11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 ZNF221Q9UK13 617 aa11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 TRBV6-7A0A0A0MS04 114 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 TMEM235A6NFC5 223 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 ST8SIA5O15466 376 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 KCNAB3O43448 404 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 RBBP9O75884 186 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 MC5RP33032 325 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 CEACAM6P40199 344 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 ALDH3B2P48448 385 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 NCS1P62166 190 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 C2orf68Q2NKX9 166 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 ZNF260Q3ZCT1 412 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 ODF3L1Q8IXM7 274 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 SERTAD4Q9NUC0 356 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 OR1A1Q9P1Q5 309 aa11.47□□□□□ -0.57
CCDC88C-207ENST00000554051 XRCC3O43542 346 aa11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 NOL3O60936 208 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 GPR12P47775 334 aa11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 RORCP51449 518 aa11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 ABCA11PQ4W5N1 156 aa11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 FAM53AQ6NSI3 398 aaPredicted RBP11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 MZT2AQ6P582 158 aa11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 FOXRED2Q8IWF2 684 aa11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 SAMD12Q8N8I0 201 aa11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 OR5H6Q8NGV6 325 aa11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 CYYR1Q96J86 154 aa11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 AGMATQ9BSE5 352 aa11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 MRPL20Q9BYC9 149 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 WNT10AQ9GZT5 417 aa11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 C11orf54Q9H0W9 315 aaPredicted RBP11.46□□□□□ -0.57
CCDC88C-207ENST00000554051 TRAV18A0A075B6X5 111 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 IGKV1-6A0A0C4DH72 117 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 BET1O15155 118 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 FBXO24O75426 580 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 APOA2P02652 100 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 VSIG10L2P0DP72 767 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 VBP1P61758 197 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 BLCAPP62952 87 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 TAGLNQ01995 201 aaKnown RBP11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 CBX3Q13185 183 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 TMEM69Q5SWH9 247 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 CNIH2Q6PI25 160 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 OR4X2Q8NGF9 303 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 RAB2BQ8WUD1 216 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 NUDCD2Q8WVJ2 157 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 RNF5Q99942 180 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 NABP2Q9BQ15 211 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 GON7Q9BXV9 100 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 GAB2Q9UQC2 676 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 SIGLEC9Q9Y336 463 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 WASHC3Q9Y3C0 194 aa11.45□□□□□ -0.58
CCDC88C-207ENST00000554051 IGHV3-72A0A0B4J1Y9 119 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 SMIM31A0A1B0GVY4 71 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 NCBP2LA6PVI3 153 aaKnown RBP11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 SLC22A5O76082 557 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 APOA1P02647 267 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 AMY1AP04745 511 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 AMY2AP04746 511 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 TFAP2AP05549 437 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 GSTT2P0CG29 244 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 GSTT2BP0CG30 244 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 SOX6P35712 828 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 TGFBR1P36897 503 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 RPL5P46777 297 aaKnown RBP11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 OR3A3P47888 321 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 ARPC4P59998 168 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 MMDQ15546 238 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 CTF1Q16619 201 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 GPR107Q5VW38 600 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 PDPNQ86YL7 162 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 H1FOOQ8IZA3 346 aaPredicted RBP11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 CHPT1Q8WUD6 406 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 ADTRPQ96IZ2 230 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 RASL11BQ9BPW5 248 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 ZNF251Q9BRH9 671 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 OR2D2Q9H210 308 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 AUNIPQ9H7T9 357 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 KIAA1456Q9P272 454 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 ZNF230Q9UIE0 474 aaPredicted RBP11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 ANXA10Q9UJ72 324 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 ZNF580Q9UK33 172 aa11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 RBM7Q9Y580 266 aaKnown RBP11.44□□□□□ -0.58
CCDC88C-207ENST00000554051 OPN1MWP04001 364 aa11.43□□□□□ -0.58
CCDC88C-207ENST00000554051 OPN1MW2P0DN77 364 aa11.43□□□□□ -0.58
CCDC88C-207ENST00000554051 OPN1MW3P0DN78 364 aa11.43□□□□□ -0.58
CCDC88C-207ENST00000554051 TMBIM6P55061 237 aa11.43□□□□□ -0.58
CCDC88C-207ENST00000554051 HNF4GQ14541 408 aa11.43□□□□□ -0.58
CCDC88C-207ENST00000554051 IGSF11Q5DX21 431 aa11.43□□□□□ -0.58
CCDC88C-207ENST00000554051 C9orf152Q5JTZ5 239 aa11.43□□□□□ -0.58
CCDC88C-207ENST00000554051 SLC35E3Q7Z769 313 aa11.43□□□□□ -0.58
CCDC88C-207ENST00000554051 COMMD1Q8N668 190 aa11.43□□□□□ -0.58
CCDC88C-207ENST00000554051 OR5AN1Q8NGI8 311 aa11.43□□□□□ -0.58
CCDC88C-207ENST00000554051 ST6GALNAC5Q9BVH7 336 aa11.43□□□□□ -0.58
CCDC88C-207ENST00000554051 MMP27Q9H306 513 aa11.43□□□□□ -0.58
CCDC88C-207ENST00000554051 SCOCQ9UIL1 159 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms