RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 TBR1Q16650 682 aa6.7□□□□□ -1.34
SCN9A-201ENST00000303354 CEACAM21Q3KPI0 293 aa6.7□□□□□ -1.34
SCN9A-201ENST00000303354 LAMTOR1Q6IAA8 161 aa6.7□□□□□ -1.34
SCN9A-201ENST00000303354 UNQ6494/PRO21346Q6UXR6 183 aa6.7□□□□□ -1.34
SCN9A-201ENST00000303354 SMIM4Q8WVI0 70 aa6.7□□□□□ -1.34
SCN9A-201ENST00000303354 PILRAQ9UKJ1 303 aa6.7□□□□□ -1.34
SCN9A-201ENST00000303354 C1QTNF9BB2RNN3 333 aa6.7□□□□□ -1.34
SCN9A-201ENST00000303354 LY6HO94772 140 aa6.7□□□□□ -1.34
SCN9A-201ENST00000303354 ADRB1P08588 477 aa6.7□□□□□ -1.34
SCN9A-201ENST00000303354 C1QTNF9P0C862 333 aa6.7□□□□□ -1.34
SCN9A-201ENST00000303354 TMEM78Q5T7P6 136 aa6.7□□□□□ -1.34
SCN9A-201ENST00000303354 SIRT4Q9Y6E7 314 aaPredicted RBP6.7□□□□□ -1.34
SCN9A-201ENST00000303354 SMCHD1A6NHR9 2005 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 ZNF735P0CB33 412 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 CD33P20138 364 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 RAX2Q96IS3 184 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 ADTRPQ96IZ2 230 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 TCEAL7Q9BRU2 100 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 A0A1W2PR77 199 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 ZNF273Q14593 569 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 FAM53AQ6NSI3 398 aaPredicted RBP6.69□□□□□ -1.34
SCN9A-201ENST00000303354 NPAP1Q9NZP6 1156 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 M0R3E3 92 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 GPX1P07203 203 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 HIST1H1EP10412 219 aaKnown RBP6.69□□□□□ -1.34
SCN9A-201ENST00000303354 RND2P52198 227 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 EWSR1Q01844 656 aaKnown RBP eCLIP6.69□□□□□ -1.34
SCN9A-201ENST00000303354 DUSP21Q9H596 190 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 CTSDP07339 412 aaPredicted RBP6.69□□□□□ -1.34
SCN9A-201ENST00000303354 FAM106AQ4KMX7 169 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 MYOZ3Q8TDC0 251 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 TEX50A0A1B0GTY4 177 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 IER3P46695 156 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 SRSF4Q08170 494 aaKnown RBP6.69□□□□□ -1.34
SCN9A-201ENST00000303354 LRRC75BQ2VPJ9 315 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 TEPPQ6URK8 271 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 PINLYPA6NC86 204 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 MFSD2BA6NFX1 497 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 DEDDO75618 318 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 KIR2DL2P43627 348 aaPredicted RBP6.69□□□□□ -1.34
SCN9A-201ENST00000303354 URB1O60287 2271 aaKnown RBP6.69□□□□□ -1.34
SCN9A-201ENST00000303354 NDUFB6O95139 128 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 MPC2O95563 127 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 DLX1P56177 255 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 AANATQ16613 207 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 ARRDC1Q8N5I2 433 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 OIT3Q8WWZ8 545 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 ZNF837Q96EG3 531 aaPredicted RBP6.69□□□□□ -1.34
SCN9A-201ENST00000303354 RGPD4Q7Z3J3 1758 aa6.69□□□□□ -1.34
SCN9A-201ENST00000303354 MBPP02686 304 aaPredicted RBP6.68□□□□□ -1.34
SCN9A-201ENST00000303354 IGHV1-2P23083 117 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 HOXC8P31273 242 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 MFAP2P55001 183 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 CX3CL1P78423 397 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 LINC00469Q8N7U9 141 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 MTFP1Q9UDX5 166 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 PRNDQ9UKY0 176 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 PLXNB2O15031 1838 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 SPCS3P61009 180 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 TMEM219Q86XT9 240 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 OR1N2Q8NGR9 330 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 ADIPOR1Q96A54 375 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 RBKSQ9H477 322 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 YTHDF2Q9Y5A9 579 aaKnown RBP6.68□□□□□ -1.34
SCN9A-201ENST00000303354 ANKRD20A5PA0PJZ0 165 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 FOXI3A8MTJ6 420 aaPredicted RBP6.68□□□□□ -1.34
SCN9A-201ENST00000303354 VPS25Q9BRG1 176 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 TMEM106BQ9NUM4 274 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 TMEM189A5PLL7 270 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 HNRNPA3P51991 378 aaKnown RBP6.68□□□□□ -1.34
SCN9A-201ENST00000303354 SRSF9Q13242 221 aaKnown RBP eCLIP6.68□□□□□ -1.34
SCN9A-201ENST00000303354 NCMAPQ5T1S8 102 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 Q6ZNX1 250 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 OR13C6PQ8NH95 151 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 TCRBV4S1A1TA0A5B7 111 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 CCL3L1P16619 93 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 NMUP48645 174 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 KLRD1Q13241 179 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 OR10D4PQ8NGN7 298 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 ST6GAL2Q96JF0 529 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 METRNQ9UJH8 293 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 LIPFP07098 398 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 CLDN18P56856 261 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 CD69Q07108 199 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 VAMP8Q9BV40 100 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 ARPC4-TTLL3A0A0A6YYG9 625 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 HELTA6NFD8 242 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 SYNGR3O43761 229 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 FOXH1O75593 365 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 PRB1P04280 392 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 GCSAMLQ5JQS6 135 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 RGPD3A6NKT7 1758 aaPredicted RBP6.68□□□□□ -1.34
SCN9A-201ENST00000303354 LINC00869P0C866 280 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 UQCRFS1P47985 274 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 UNC119Q13432 240 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 BRD3OSQ6XYD6 125 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 SPSB2Q99619 263 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 DLL3Q9NYJ7 618 aa6.68□□□□□ -1.34
SCN9A-201ENST00000303354 STRCP1A6NGW2 1772 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 TBX19O60806 448 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms