RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 Q6ZTI0 123 aa1.53□□□□□ -2.16
SS18-214ENST00000580003 C2orf91Q6ZV80 131 aa1.53□□□□□ -2.16
SS18-214ENST00000580003 MRPL52Q86TS9 123 aaKnown RBP1.53□□□□□ -2.16
SS18-214ENST00000580003 TMEM216Q9P0N5 145 aa1.53□□□□□ -2.16
SS18-214ENST00000580003 A0A1B0GVG6 124 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 TMEM235A6NFC5 223 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 C11orf86A6NJI1 115 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 H0YC42 278 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 GNRH2O43555 120 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 TSPEAR-AS2P59090 65 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 CENPWQ5EE01 88 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 AHSA2Q719I0 299 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 YIPF7Q8N8F6 280 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 CDRT4Q8N9R6 151 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 OR2Y1Q8NGV0 311 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 C11orf1Q9H5F2 150 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 BABAM2Q9NXR7 383 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 SNX24Q9Y343 169 aa1.52□□□□□ -2.17
SS18-214ENST00000580003 LINC00862A6NCI5 91 aa1.51□□□□□ -2.17
SS18-214ENST00000580003 ATP6V0CP27449 155 aa1.51□□□□□ -2.17
SS18-214ENST00000580003 RAP1GDS1P52306 607 aa1.51□□□□□ -2.17
SS18-214ENST00000580003 C18orf21Q32NC0 220 aaPredicted RBP1.51□□□□□ -2.17
SS18-214ENST00000580003 FAM201AQ5SY85 155 aa1.51□□□□□ -2.17
SS18-214ENST00000580003 MTERF4Q7Z6M4 381 aaKnown RBP1.51□□□□□ -2.17
SS18-214ENST00000580003 DOLPP1Q86YN1 238 aa1.51□□□□□ -2.17
SS18-214ENST00000580003 OR5K1Q8NHB7 308 aa1.51□□□□□ -2.17
SS18-214ENST00000580003 LRRC20Q8TCA0 184 aa1.51□□□□□ -2.17
SS18-214ENST00000580003 TBX5Q99593 518 aa1.51□□□□□ -2.17
SS18-214ENST00000580003 RAB1BQ9H0U4 201 aa1.51□□□□□ -2.17
SS18-214ENST00000580003 SNX12Q9UMY4 172 aa1.51□□□□□ -2.17
SS18-214ENST00000580003 KDM5BQ9UGL1 1544 aa1.5□□□□□ -2.17
SS18-214ENST00000580003 ADAMTSL1Q8N6G6 1762 aa1.5□□□□□ -2.17
SS18-214ENST00000580003 C2orf74A8MZ97 194 aa1.5□□□□□ -2.17
SS18-214ENST00000580003 SNAP29O95721 258 aa1.5□□□□□ -2.17
SS18-214ENST00000580003 ORM2P19652 201 aa1.5□□□□□ -2.17
SS18-214ENST00000580003 ERHP84090 104 aaKnown RBP1.5□□□□□ -2.17
SS18-214ENST00000580003 ZNF90Q03938 601 aa1.5□□□□□ -2.17
SS18-214ENST00000580003 RELAQ04206 551 aa1.5□□□□□ -2.17
SS18-214ENST00000580003 TRMT12Q53H54 448 aaKnown RBP1.5□□□□□ -2.17
SS18-214ENST00000580003 LRRC6Q86X45 466 aa1.5□□□□□ -2.17
SS18-214ENST00000580003 LRRC39Q96DD0 335 aa1.5□□□□□ -2.17
SS18-214ENST00000580003 DNAJC12Q9UKB3 198 aa1.5□□□□□ -2.17
SS18-214ENST00000580003 MRPS16Q9Y3D3 137 aaKnown RBP1.5□□□□□ -2.17
SS18-214ENST00000580003 EFCAB9A8MZ26 197 aa1.49□□□□□ -2.17
SS18-214ENST00000580003 CRHBPP24387 322 aa1.49□□□□□ -2.17
SS18-214ENST00000580003 NUP62P37198 522 aaPredicted RBP1.49□□□□□ -2.17
SS18-214ENST00000580003 PSMB3P49720 205 aa1.49□□□□□ -2.17
SS18-214ENST00000580003 FLOT2Q14254 428 aa1.49□□□□□ -2.17
SS18-214ENST00000580003 ST13P4Q8IZP2 240 aaPredicted RBP1.49□□□□□ -2.17
SS18-214ENST00000580003 OR4P4Q8NGL7 312 aa1.49□□□□□ -2.17
SS18-214ENST00000580003 FNDC9Q8TBE3 224 aa1.49□□□□□ -2.17
SS18-214ENST00000580003 C10orf105Q8TEF2 133 aa1.49□□□□□ -2.17
SS18-214ENST00000580003 TMEM239Q8WW34 195 aa1.49□□□□□ -2.17
SS18-214ENST00000580003 FGF13Q92913 245 aa1.49□□□□□ -2.17
SS18-214ENST00000580003 PRRG3Q9BZD7 231 aa1.49□□□□□ -2.17
SS18-214ENST00000580003 PLCH2O75038 1416 aa1.49□□□□□ -2.17
SS18-214ENST00000580003 DNMT1P26358 1616 aaKnown RBP1.48□□□□□ -2.17
SS18-214ENST00000580003 GPR171O14626 319 aa1.48□□□□□ -2.17
SS18-214ENST00000580003 ACTBP60709 375 aa1.48□□□□□ -2.17
SS18-214ENST00000580003 ACTG1P63261 375 aa1.48□□□□□ -2.17
SS18-214ENST00000580003 TNNC1P63316 161 aa1.48□□□□□ -2.17
SS18-214ENST00000580003 OR10J3Q5JRS4 329 aa1.48□□□□□ -2.17
SS18-214ENST00000580003 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.48□□□□□ -2.17
SS18-214ENST00000580003 SPACA4Q8TDM5 124 aa1.48□□□□□ -2.17
SS18-214ENST00000580003 MAT2BQ9NZL9 334 aa1.48□□□□□ -2.17
SS18-214ENST00000580003 COMMD9Q9P000 198 aa1.48□□□□□ -2.17
SS18-214ENST00000580003 SDK1Q7Z5N4 2213 aa1.48□□□□□ -2.17
SS18-214ENST00000580003 TNIKQ9UKE5 1360 aa1.47□□□□□ -2.17
SS18-214ENST00000580003 RPL14P50914 215 aaKnown RBP1.47□□□□□ -2.17
SS18-214ENST00000580003 CARD18P57730 90 aa1.47□□□□□ -2.17
SS18-214ENST00000580003 XIAPP98170 497 aa1.47□□□□□ -2.17
SS18-214ENST00000580003 GTF2BQ00403 316 aa1.47□□□□□ -2.17
SS18-214ENST00000580003 XRCC4Q13426 336 aa1.47□□□□□ -2.17
SS18-214ENST00000580003 TTC33Q6PID6 262 aaPredicted RBP1.47□□□□□ -2.17
SS18-214ENST00000580003 CHST5Q9GZS9 411 aa1.47□□□□□ -2.17
SS18-214ENST00000580003 LINC00527Q9UJ94 153 aa1.47□□□□□ -2.17
SS18-214ENST00000580003 LDOC1O95751 146 aaPredicted RBP1.46□□□□□ -2.18
SS18-214ENST00000580003 NPPCP23582 126 aa1.46□□□□□ -2.18
SS18-214ENST00000580003 HSP90B2PQ58FF3 399 aa1.46□□□□□ -2.18
SS18-214ENST00000580003 PABPC1L2AQ5JQF8 200 aa1.46□□□□□ -2.18
SS18-214ENST00000580003 ABHD14BQ96IU4 210 aa1.46□□□□□ -2.18
SS18-214ENST00000580003 TRNT1Q96Q11 434 aaKnown RBP1.46□□□□□ -2.18
SS18-214ENST00000580003 RETNLBQ9BQ08 111 aa1.46□□□□□ -2.18
SS18-214ENST00000580003 MIEN1Q9BRT3 115 aa1.46□□□□□ -2.18
SS18-214ENST00000580003 HHLA2Q9UM44 414 aa1.46□□□□□ -2.18
SS18-214ENST00000580003 FN1P02751 2386 aaKnown RBP1.45□□□□□ -2.18
SS18-214ENST00000580003 A0A1B0GX12 115 aa1.45□□□□□ -2.18
SS18-214ENST00000580003 ZW10O43264 779 aa1.45□□□□□ -2.18
SS18-214ENST00000580003 STK16O75716 305 aa1.45□□□□□ -2.18
SS18-214ENST00000580003 CDK2P24941 298 aa1.45□□□□□ -2.18
SS18-214ENST00000580003 FGF12P61328 243 aa1.45□□□□□ -2.18
SS18-214ENST00000580003 RNF133Q8WVZ7 376 aa1.45□□□□□ -2.18
SS18-214ENST00000580003 M0QYV0 167 aa1.44□□□□□ -2.18
SS18-214ENST00000580003 PHYHO14832 338 aa1.44□□□□□ -2.18
SS18-214ENST00000580003 CST4P01036 141 aa1.44□□□□□ -2.18
SS18-214ENST00000580003 CCDC172P0C7W6 258 aa1.44□□□□□ -2.18
SS18-214ENST00000580003 ZNF705DP0CH99 300 aaPredicted RBP1.44□□□□□ -2.18
SS18-214ENST00000580003 ZNF705BP0CI00 300 aaPredicted RBP1.44□□□□□ -2.18
SS18-214ENST00000580003 NQO2P16083 231 aa1.44□□□□□ -2.18
SS18-214ENST00000580003 OPRM1P35372 400 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms