RNA–Protein interactions for RNA: ENST00000396854.8

TM9SF1-202, Transcript of transmembrane 9 superfamily member 1, humanhuman

TSL 1 (best) BASIC

Gene TM9SF1, Length 2,055 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF1-202ENST00000396854 SMIM21Q3B7S5 101 aa12.4□□□□□ -0.42
TM9SF1-202ENST00000396854 DHRS11Q6UWP2 260 aa12.4□□□□□ -0.42
TM9SF1-202ENST00000396854 LINC00596Q86U02 117 aa12.4□□□□□ -0.42
TM9SF1-202ENST00000396854 FAM90A1Q86YD7 464 aa12.4□□□□□ -0.42
TM9SF1-202ENST00000396854 FAM219AQ8IW50 185 aa12.4□□□□□ -0.42
TM9SF1-202ENST00000396854 C1orf87Q8N0U7 546 aa12.4□□□□□ -0.42
TM9SF1-202ENST00000396854 FAAP24Q9BTP7 215 aa12.4□□□□□ -0.42
TM9SF1-202ENST00000396854 TREM1Q9NP99 234 aa12.4□□□□□ -0.42
TM9SF1-202ENST00000396854 NECAP2Q9NVZ3 263 aa12.4□□□□□ -0.42
TM9SF1-202ENST00000396854 TREM2Q9NZC2 230 aa12.4□□□□□ -0.42
TM9SF1-202ENST00000396854 PTPN13Q12923 2485 aa12.4□□□□□ -0.42
TM9SF1-202ENST00000396854 TMEM178BH3BS89 294 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 K7EPK0 472 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 WNT9BO14905 357 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 PDCD6O75340 191 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 F12P00748 615 aaPredicted RBP12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 IFNA21P01568 189 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 FCGR3AP08637 254 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 RPL12P30050 165 aaKnown RBP12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 EFNA4P52798 201 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 SMCO1Q147U7 214 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 ZNF146Q15072 292 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 HFEQ30201 348 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 SPIN3Q5JUX0 258 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 GGNBP1Q5YKI7 109 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 HIST2H2BCQ6DN03 193 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 SPAG16Q8N0X2 631 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 FAM71E2Q8N5Q1 922 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 CCL17Q92583 94 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 RDH5Q92781 318 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 LIME1Q9H400 295 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 DCAF16Q9NXF7 216 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 IL36RNQ9UBH0 155 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 PRELID3BQ9Y3B1 194 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 C3orf80F5H4A9 247 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 PAX1P15863 534 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 COL8A2P25067 703 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 KRTAP10-9P60411 292 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 HOXA4Q00056 320 aaPredicted RBP12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 MPV17LQ2QL34 196 aa12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 FIP1L1Q6UN15 594 aaKnown RBP12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 CMSS1Q9BQ75 279 aaKnown RBP12.39□□□□□ -0.43
TM9SF1-202ENST00000396854 JTBO76095 146 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 DAOP14920 347 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 RCC1P18754 421 aaPredicted RBP12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 LPAR6P43657 344 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 TEX36Q5VZQ5 186 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 FOXRED2Q8IWF2 684 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 GALNT14Q96FL9 552 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 SULT4A1Q9BR01 284 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 HRH4Q9H3N8 390 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 TMEM231Q9H6L2 316 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 NAA60Q9H7X0 242 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 PLEKHA2Q9HB19 425 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 PARP11Q9NR21 331 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 ZNF581Q9P0T4 197 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 RCC2Q9P258 522 aaKnown RBP12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 AKAP6Q13023 2319 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 H7C2Y5 167 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 NDUFS7O75251 213 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 MED6O75586 246 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 LY6HO94772 140 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 FSTL3O95633 263 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 ZNF728P0DKX0 622 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 MUC1P15941 1255 aaPredicted RBP12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 FUT3P21217 361 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 FCGR2CP31995 323 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 PIGPP57054 158 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 TMEM187Q14656 261 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 TMEM88Q6PEY1 159 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 BTNL8Q6UX41 500 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 NRGNQ92686 78 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 IFT22Q9H7X7 185 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 SEBOXQ9HB31 216 aaPredicted RBP12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 FBXL17Q9UF56 701 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 KCNIP3Q9Y2W7 256 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 POMT1Q9Y6A1 747 aa12.38□□□□□ -0.43
TM9SF1-202ENST00000396854 NBPF19A0A087WUL8 3843 aa12.37□□□□□ -0.43
TM9SF1-202ENST00000396854 USF3Q68DE3 2245 aa12.37□□□□□ -0.43
TM9SF1-202ENST00000396854 OOEPA6NGQ2 149 aa12.37□□□□□ -0.43
TM9SF1-202ENST00000396854 CD80P33681 288 aa12.37□□□□□ -0.43
TM9SF1-202ENST00000396854 FAM201AQ5SY85 155 aa12.37□□□□□ -0.43
TM9SF1-202ENST00000396854 CBLN2Q8IUK8 224 aa12.37□□□□□ -0.43
TM9SF1-202ENST00000396854 LRTM2Q8N967 370 aa12.37□□□□□ -0.43
TM9SF1-202ENST00000396854 PPIAL4EA0A075B759 164 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 PPIAL4DF5H284 164 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 LYNX1G3V0Z9 82 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 HEXAP06865 529 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 PPIAL4FP0DN26 164 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 LYNX1P0DP58 116 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 PVALBP20472 110 aaPredicted RBP12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 NPBWR1P48145 328 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 TMEM33P57088 247 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 Q6P435 159 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 UBAC2Q8NBM4 344 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 SUCNR1Q9BXA5 334 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 CHODLQ9H9P2 273 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 FAM96BQ9Y3D0 163 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 PPIAL4AQ9Y536 164 aa12.36□□□□□ -0.43
TM9SF1-202ENST00000396854 TACC2O95359 2948 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms