RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 SCAND1P57086 179 aa15.67■□□□□ 0.1
SHKBP1-221ENST00000599833 HTD2P86397 168 aa15.67■□□□□ 0.1
SHKBP1-221ENST00000599833 LY6EQ16553 131 aa15.67■□□□□ 0.1
SHKBP1-221ENST00000599833 CT45A1Q5HYN5 189 aa15.67■□□□□ 0.1
SHKBP1-221ENST00000599833 SLC25A48Q6ZT89 311 aaKnown RBP15.67■□□□□ 0.1
SHKBP1-221ENST00000599833 OR52L2PQ8NGH6 319 aa15.67■□□□□ 0.1
SHKBP1-221ENST00000599833 CT45A3Q8NHU0 189 aa15.67■□□□□ 0.1
SHKBP1-221ENST00000599833 RAB3CQ96E17 227 aa15.67■□□□□ 0.1
SHKBP1-221ENST00000599833 IGKV1-6A0A0C4DH72 117 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 FAM90A9PA6NNJ1 464 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 TOR1AO14656 332 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 SPINT2O43291 252 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 ZNF137PP52743 207 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 VBP1P61758 197 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 MORN2Q502X0 79 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 LY6G6FQ5SQ64 297 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 Q6ZSV7 163 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 PRR18Q8N4B5 295 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 OR10V1Q8NGI7 309 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 CFHR4Q92496 578 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 RIMS4Q9H426 269 aaPredicted RBP15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 C12orf4Q9NQ89 552 aa15.66■□□□□ 0.1
SHKBP1-221ENST00000599833 POM121CA8CG34 1229 aa15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 MDKP21741 143 aaPredicted RBP15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 HABP2Q14520 560 aaPredicted RBP15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 IDNKQ5T6J7 187 aa15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 MOB1BQ7L9L4 216 aa15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 GCDHQ92947 438 aaPredicted RBP15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 SLC25A46Q96AG3 418 aa15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 CMSS1Q9BQ75 279 aaKnown RBP15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 OCSTAMPQ9BR26 566 aa15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 ATG5Q9H1Y0 275 aa15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 RHBDL2Q9NX52 303 aa15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 JPT1Q9UK76 154 aa15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 MMP24Q9Y5R2 645 aa15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 ETV7Q9Y603 341 aa15.65■□□□□ 0.1
SHKBP1-221ENST00000599833 OOSP1A8MZH6 123 aa15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 TMEM127O75204 238 aa15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 TSPAN9O75954 239 aa15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 FCGR3AP08637 254 aa15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 HLA-DRB3P79483 266 aa15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 HERPUD1Q15011 391 aa15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 ZNF260Q3ZCT1 412 aa15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 ODF3L1Q8IXM7 274 aa15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 CREB3L1Q96BA8 519 aa15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 PARP12Q9H0J9 701 aaKnown RBP15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 OR2S2Q9NQN1 319 aa15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 SPATA2Q9UM82 520 aa15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 PKD1L1Q8TDX9 2849 aa15.64■□□□□ 0.09
SHKBP1-221ENST00000599833 VWFP04275 2813 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 IGKV1D-8A0A087WSZ0 117 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 METTL21EPA6NDL7 271 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 BTBD17A6NE02 478 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 YPEL1O60688 119 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 SCTP09683 121 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 CD24P25063 80 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 PPP1CCP36873 323 aaKnown RBP15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 RAG2P55895 527 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 ZNF816Q0VGE8 651 aaPredicted RBP15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 FOXL1Q12952 345 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 MADCAM1Q13477 382 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 TMEM219Q86XT9 240 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 GALMQ96C23 342 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 YPEL2Q96QA6 119 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 C16orf95Q9H693 158 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 CHMP1AQ9HD42 196 aaPredicted RBP15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 KCNIP1Q9NZI2 227 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 GNG12Q9UBI6 72 aa15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 AMMECR1Q9Y4X0 333 aaPredicted RBP15.63■□□□□ 0.09
SHKBP1-221ENST00000599833 SERPINE3A8MV23 424 aa15.62■□□□□ 0.09
SHKBP1-221ENST00000599833 CEACAM3P40198 252 aa15.62■□□□□ 0.09
SHKBP1-221ENST00000599833 SERPINB10P48595 397 aa15.62■□□□□ 0.09
SHKBP1-221ENST00000599833 GPR107Q5VW38 600 aa15.62■□□□□ 0.09
SHKBP1-221ENST00000599833 STEAP3Q658P3 488 aa15.62■□□□□ 0.09
SHKBP1-221ENST00000599833 LIAT1Q6ZQX7 453 aa15.62■□□□□ 0.09
SHKBP1-221ENST00000599833 LINC01006Q8NI28 216 aa15.62■□□□□ 0.09
SHKBP1-221ENST00000599833 RAB9BQ9NP90 201 aa15.62■□□□□ 0.09
SHKBP1-221ENST00000599833 ABRACLQ9P1F3 81 aa15.62■□□□□ 0.09
SHKBP1-221ENST00000599833 OR1A1Q9P1Q5 309 aa15.62■□□□□ 0.09
SHKBP1-221ENST00000599833 HSD17B6O14756 317 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 TIMM23O14925 209 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 SSX5O60225 188 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 CDNFQ49AH0 187 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 HACD4Q5VWC8 232 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 DHRS7BQ6IAN0 325 aaPredicted RBP15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 Q6ZS49 121 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 CROCCP3Q8IVE0 287 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 OR10X1Q8NGY0 326 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 SETD6Q8TBK2 473 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 TOMM40LQ969M1 308 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 TOLLIPQ9H0E2 274 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 ABCG5Q9H222 651 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 IFI27L2Q9H2X8 130 aa15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 ZNF230Q9UIE0 474 aaPredicted RBP15.61■□□□□ 0.09
SHKBP1-221ENST00000599833 A0A075B6Q4 140 aa15.6■□□□□ 0.09
SHKBP1-221ENST00000599833 TRDCB7Z8K6 153 aa15.6■□□□□ 0.09
SHKBP1-221ENST00000599833 AMY1AP04745 511 aa15.6■□□□□ 0.09
SHKBP1-221ENST00000599833 AMY2AP04746 511 aa15.6■□□□□ 0.09
SHKBP1-221ENST00000599833 PROK1P58294 105 aa15.6■□□□□ 0.09
SHKBP1-221ENST00000599833 KRTAP10-3P60369 221 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms