RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 CACNA1GO43497 2377 aa18.69■□□□□ 0.58
UPF3A-201ENST00000351487 C1QTNF9BB2RNN3 333 aa18.69■□□□□ 0.58
UPF3A-201ENST00000351487 GPR37O15354 613 aa18.69■□□□□ 0.58
UPF3A-201ENST00000351487 RHEBQ15382 184 aa18.69■□□□□ 0.58
UPF3A-201ENST00000351487 AKIRIN2Q53H80 203 aa18.69■□□□□ 0.58
UPF3A-201ENST00000351487 DPPA3Q6W0C5 159 aa18.69■□□□□ 0.58
UPF3A-201ENST00000351487 PRR18Q8N4B5 295 aa18.69■□□□□ 0.58
UPF3A-201ENST00000351487 RNASE11Q8TAA1 199 aaKnown RBP18.69■□□□□ 0.58
UPF3A-201ENST00000351487 CACNG5Q9UF02 275 aa18.69■□□□□ 0.58
UPF3A-201ENST00000351487 AKR1C3P42330 323 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 HOXA1P49639 335 aaPredicted RBP18.68■□□□□ 0.58
UPF3A-201ENST00000351487 TAS2R30P59541 319 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 RUNX1Q01196 453 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 ZNF585BQ52M93 769 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 TRIB1Q96RU8 372 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 PPP1R3CQ9UQK1 317 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 A0A1B0GV50 99 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 IGKV1-5P01602 117 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 IGKV3-15P01624 115 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 SNRNP70P08621 437 aaKnown RBP18.68■□□□□ 0.58
UPF3A-201ENST00000351487 CBR1P16152 277 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 COX5AP20674 150 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 CCL20P78556 96 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 FIP1L1Q6UN15 594 aaKnown RBP18.68■□□□□ 0.58
UPF3A-201ENST00000351487 KLF14Q8TD94 323 aaPredicted RBP18.68■□□□□ 0.58
UPF3A-201ENST00000351487 HIST1H2BAQ96A08 127 aa18.68■□□□□ 0.58
UPF3A-201ENST00000351487 RBFOX3A6NFN3 312 aa18.67■□□□□ 0.58
UPF3A-201ENST00000351487 M0R036 132 aa18.67■□□□□ 0.58
UPF3A-201ENST00000351487 HAND1O96004 215 aa18.67■□□□□ 0.58
UPF3A-201ENST00000351487 IGFL2Q6UWQ7 119 aa18.67■□□□□ 0.58
UPF3A-201ENST00000351487 PIP4P1Q86T03 277 aa18.67■□□□□ 0.58
UPF3A-201ENST00000351487 C1orf162Q8NEQ5 155 aaPredicted RBP18.67■□□□□ 0.58
UPF3A-201ENST00000351487 RARRES2Q99969 163 aa18.67■□□□□ 0.58
UPF3A-201ENST00000351487 KCNS2Q9ULS6 477 aa18.67■□□□□ 0.58
UPF3A-201ENST00000351487 H0YL77 283 aa18.66■□□□□ 0.58
UPF3A-201ENST00000351487 MPV17P39210 176 aa18.66■□□□□ 0.58
UPF3A-201ENST00000351487 IZUMO4Q1ZYL8 232 aa18.66■□□□□ 0.58
UPF3A-201ENST00000351487 RNF212Q495C1 297 aa18.66■□□□□ 0.58
UPF3A-201ENST00000351487 AKR1C8PQ5T2L2 129 aa18.66■□□□□ 0.58
UPF3A-201ENST00000351487 FDCSPQ8NFU4 85 aa18.66■□□□□ 0.58
UPF3A-201ENST00000351487 RBM7Q9Y580 266 aaKnown RBP18.66■□□□□ 0.58
UPF3A-201ENST00000351487 AQP7O14520 342 aa18.66■□□□□ 0.58
UPF3A-201ENST00000351487 NKX2-8O15522 239 aa18.66■□□□□ 0.58
UPF3A-201ENST00000351487 SYNGR2O43760 224 aa18.66■□□□□ 0.58
UPF3A-201ENST00000351487 GRPP07492 148 aa18.66■□□□□ 0.58
UPF3A-201ENST00000351487 DRAM1Q8N682 238 aa18.66■□□□□ 0.58
UPF3A-201ENST00000351487 H3BP45 60 aa18.65■□□□□ 0.58
UPF3A-201ENST00000351487 MLNRO43193 412 aa18.65■□□□□ 0.58
UPF3A-201ENST00000351487 MT-ND4LP03901 98 aa18.65■□□□□ 0.58
UPF3A-201ENST00000351487 OR13C7P0DN81 318 aa18.65■□□□□ 0.58
UPF3A-201ENST00000351487 CEACAM6P40199 344 aa18.65■□□□□ 0.58
UPF3A-201ENST00000351487 URB1O60287 2271 aaKnown RBP18.65■□□□□ 0.58
UPF3A-201ENST00000351487 TMEM30CPA0ZSE6 113 aa18.65■□□□□ 0.58
UPF3A-201ENST00000351487 PSPNO60542 156 aa18.65■□□□□ 0.58
UPF3A-201ENST00000351487 SOHLH1Q5JUK2 328 aa18.65■□□□□ 0.58
UPF3A-201ENST00000351487 UBALD1Q8TB05 177 aa18.65■□□□□ 0.58
UPF3A-201ENST00000351487 CD300LFQ8TDQ1 290 aa18.65■□□□□ 0.58
UPF3A-201ENST00000351487 TINAGQ9UJW2 476 aa18.65■□□□□ 0.58
UPF3A-201ENST00000351487 GTF3C1Q12789 2109 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 KIAA2026Q5HYC2 2103 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP18.64■□□□□ 0.57
UPF3A-201ENST00000351487 RNF212BA8MTL3 300 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 WDR1O75083 606 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 KIR2DL2P43627 348 aaPredicted RBP18.64■□□□□ 0.57
UPF3A-201ENST00000351487 CCL11P51671 97 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 TLE4Q04727 773 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 TMEM267Q0VDI3 215 aaPredicted RBP18.64■□□□□ 0.57
UPF3A-201ENST00000351487 HABP2Q14520 560 aaPredicted RBP18.64■□□□□ 0.57
UPF3A-201ENST00000351487 WDR31Q8NA23 367 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 C20orf24Q9BUV8 137 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 UNKLQ9H9P5 680 aaKnown RBP18.64■□□□□ 0.57
UPF3A-201ENST00000351487 OBP2BQ9NPH6 170 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 IFNA5P01569 189 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 PTAFRP25105 342 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 RAB5BP61020 215 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 C11orf53Q8IXP5 236 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 RBMXL1Q96E39 390 aaKnown RBP18.64■□□□□ 0.57
UPF3A-201ENST00000351487 KCNIP1Q9NZI2 227 aa18.64■□□□□ 0.57
UPF3A-201ENST00000351487 IGHV3-64DA0A0J9YX35 117 aa18.63■□□□□ 0.57
UPF3A-201ENST00000351487 HBE1P02100 147 aa18.63■□□□□ 0.57
UPF3A-201ENST00000351487 TUBG1P23258 451 aa18.63■□□□□ 0.57
UPF3A-201ENST00000351487 HOXC12P31275 282 aa18.63■□□□□ 0.57
UPF3A-201ENST00000351487 SRSF6Q13247 344 aaKnown RBP18.63■□□□□ 0.57
UPF3A-201ENST00000351487 SLC35E4Q6ICL7 350 aa18.63■□□□□ 0.57
UPF3A-201ENST00000351487 CNEP1R1Q8N9A8 125 aa18.63■□□□□ 0.57
UPF3A-201ENST00000351487 ZBTB34Q8NCN2 500 aa18.63■□□□□ 0.57
UPF3A-201ENST00000351487 TUBG2Q9NRH3 451 aa18.63■□□□□ 0.57
UPF3A-201ENST00000351487 COA4Q9NYJ1 87 aa18.63■□□□□ 0.57
UPF3A-201ENST00000351487 OR14J1Q9UGF5 321 aa18.63■□□□□ 0.57
UPF3A-201ENST00000351487 TRAV1-1A0A0B4J248 108 aa18.62■□□□□ 0.57
UPF3A-201ENST00000351487 CEBPDP49716 269 aaPredicted RBP18.62■□□□□ 0.57
UPF3A-201ENST00000351487 ZNF506Q5JVG8 444 aa18.62■□□□□ 0.57
UPF3A-201ENST00000351487 ZNF645Q8N7E2 425 aa18.62■□□□□ 0.57
UPF3A-201ENST00000351487 C2CD4CQ8TF44 421 aa18.62■□□□□ 0.57
UPF3A-201ENST00000351487 TOLLIPQ9H0E2 274 aa18.62■□□□□ 0.57
UPF3A-201ENST00000351487 ESRP2Q9H6T0 727 aaKnown RBP18.62■□□□□ 0.57
UPF3A-201ENST00000351487 ASCL3Q9NQ33 180 aa18.62■□□□□ 0.57
UPF3A-201ENST00000351487 FAM90A26D6RGX4 464 aa18.62■□□□□ 0.57
UPF3A-201ENST00000351487 ZNF16P17020 682 aaPredicted RBP18.62■□□□□ 0.57
UPF3A-201ENST00000351487 VWA1Q6PCB0 445 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms