RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PMVKQ15126 192 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM52BQ4KMG9 183 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PYCR3Q53H96 274 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TEX45Q8NA69 505 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 OR9G4Q8NGQ1 327 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PCGF1Q9BSM1 259 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CNTD2Q9H8S5 307 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 MMP25Q9NPA2 562 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 YAE1D1Q9NRH1 226 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 MRPL16Q9NX20 251 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 RABAC1Q9UI14 185 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 LSM2Q9Y333 95 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM269A0A1B0GVZ9 245 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 LINC00862A6NCI5 91 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ST8SIA3O43173 380 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SNRPBP14678 240 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CD40P25942 277 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SRIP30626 198 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 RIPPLY3P57055 190 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 RAC3P60763 192 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 EDDM3AQ14507 147 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM241Q24JQ0 296 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 FAM71F2Q6NXP2 309 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 OR4K5Q8NGD3 323 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SSBP4Q9BWG4 385 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PLAC1Q9HBJ0 212 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 MANBALQ9NQG1 85 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 DTLQ9NZJ0 730 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PEF1Q9UBV8 284 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PXDNQ92626 1479 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 B4DEV8 164 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 NPFFO15130 113 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 FCGR3BO75015 233 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SIX3O95343 332 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CYB5R3P00387 301 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CST5P28325 142 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CLDN18P56856 261 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 FAM71E1Q6IPT2 247 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 LRRTM3Q86VH5 581 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 GALNT16Q8N428 558 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SEH1LQ96EE3 360 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 C4orf45Q96LM5 186 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 C2orf50Q96LR7 162 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ANGPTL4Q9BY76 406 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 BANF2Q9H503 90 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM74BQ9NUR3 256 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 COA4Q9NYJ1 87 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TEX264Q9Y6I9 313 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 A0A1B0GU03 582 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TRDV1A0A1B0GX56 115 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SNRPGP15A8MWD9 76 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 GYPAP02724 150 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 HIST1H1DP16402 221 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 RPL12P30050 165 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 THBS4P35443 961 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 WNT5AP41221 380 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF140P52738 457 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 HERPUD1Q15011 391 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 FAM74A3Q4VXF1 159 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TREML2Q5T2D2 321 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 MRPL54Q6P161 138 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 C20orf204Q6ZNR8 217 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 RTN4RL2Q86UN3 420 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SPACA9Q96E40 222 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 COX14Q96I36 57 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 KCNS1Q96KK3 526 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 GUCD1Q96NT3 240 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 HIST1H4GQ99525 98 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 NRIP2Q9BQI9 281 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PLAGL1Q9UM63 463 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ITPR3Q14573 2671 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TRAV5A0A0B4J249 113 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CLDN5O00501 218 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SPINT1O43278 529 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PIAS2O75928 621 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 COL9A1P20849 921 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 P2RY2P41231 377 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 EFNB2P52799 333 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF362Q5T0B9 420 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SPANXN1Q5VSR9 72 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 OR2Z1Q8NG97 314 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 MRPL30Q8TCC3 161 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 GATA6Q92908 595 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TAS2R5Q9NYW4 299 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 GEMIN2O14893 280 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CRLF1O75462 422 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 DAOP14920 347 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF77Q15935 545 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 C2orf68Q2NKX9 166 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 LRRC75BQ2VPJ9 315 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SYPL2Q5VXT5 272 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TBPL2Q6SJ96 375 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 Q8NFD4 153 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 GEMIN7Q9H840 131 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TINAGQ9UJW2 476 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 F11RQ9Y624 299 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 FLNBO75369 2602 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TRAV8-7A0A075B6U6 113 aa2.46□□□□□ -2.01
SCN1A-219ENST00000641575 A0A0D9SEW6 157 aa2.46□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms