RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 OR2T35Q8NGX2 323 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 Q8TCH9 128 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 CASTOR1Q8WTX7 329 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 TOMM40LQ969M1 308 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 MOB3AQ96BX8 217 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 CYYR1Q96J86 154 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 SNX22Q96L94 193 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 OR2A7Q96R45 310 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 GCM1Q9NP62 436 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 CISD1Q9NZ45 108 aaKnown RBP7.49□□□□□ -1.21
VPS39-207ENST00000563692 FBXO9Q9UK97 447 aaPredicted RBP7.49□□□□□ -1.21
VPS39-207ENST00000563692 PPP1R3CQ9UQK1 317 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 PIGBOS1A0A0B4J2F0 54 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 OOEPA6NGQ2 149 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 SHISA9B4DS77 424 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 E7EQL1 145 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 PPYP01298 95 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 IFNA2P01563 188 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 PSG2P11465 335 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 PAX1P15863 534 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 GZMHP20718 246 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 AADACP22760 399 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 NFYAP23511 347 aaPredicted RBP7.48□□□□□ -1.21
VPS39-207ENST00000563692 RBMXP38159 391 aaKnown RBP7.48□□□□□ -1.21
VPS39-207ENST00000563692 GABRA2P47869 451 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 NKX2-5P52952 324 aaPredicted RBP7.48□□□□□ -1.21
VPS39-207ENST00000563692 FXYD4P59646 89 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 BAMBIQ13145 260 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 ATXN7L3Q14CW9 347 aaPredicted RBP7.48□□□□□ -1.21
VPS39-207ENST00000563692 EFNB3Q15768 340 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 IGSF11Q5DX21 431 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 KRBOX4Q5JUW0 171 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 C6orf183Q5T699 404 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 GSG1LQ6UXU4 331 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 KCTD9Q7L273 389 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 KRTAP1-3Q8IUG1 177 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 CMTM1Q8IZ96 169 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 GCSAMQ8N6F7 178 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 ZBTB8BQ8NAP8 495 aaPredicted RBP7.48□□□□□ -1.21
VPS39-207ENST00000563692 KIRREL1Q96J84 757 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 PDCD10Q9BUL8 212 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 RSRP1Q9BUV0 290 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 TMPRSS13Q9BYE2 586 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 GSX1Q9H4S2 264 aaPredicted RBP7.48□□□□□ -1.21
VPS39-207ENST00000563692 RAB9BQ9NP90 201 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 DYNLRB1Q9NP97 96 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 MBNL3Q9NUK0 354 aaKnown RBP7.48□□□□□ -1.21
VPS39-207ENST00000563692 COMMD9Q9P000 198 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 USF3Q68DE3 2245 aa7.48□□□□□ -1.21
VPS39-207ENST00000563692 DSCAMO60469 2012 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 TRBV6-7A0A0A0MS04 114 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 CRYM-AS1A6NIL9 109 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 NPIPB11E5RHQ5 1161 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 SMLR1H3BR10 107 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 MGST3O14880 152 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 SMAD7O15105 426 aaKnown RBP7.47□□□□□ -1.21
VPS39-207ENST00000563692 HSPA12AO43301 675 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 PSPNO60542 156 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 IFNA21P01568 189 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 SOD3P08294 240 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 MUC1P15941 1255 aaPredicted RBP7.47□□□□□ -1.21
VPS39-207ENST00000563692 RCC1P18754 421 aaPredicted RBP7.47□□□□□ -1.21
VPS39-207ENST00000563692 PI3P19957 117 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 IL2RGP31785 369 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 PIGPP57054 158 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 PAX5Q02548 391 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 AESQ08117 197 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 SLC9A3R2Q15599 337 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 ZNF561Q8N587 486 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 CD177Q8N6Q3 437 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 ASCC1Q8N9N2 400 aaKnown RBP7.47□□□□□ -1.21
VPS39-207ENST00000563692 OR5M8Q8NGP6 311 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 PLPPR1Q8TBJ4 325 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 RTN4IP1Q8WWV3 396 aaPredicted RBP7.47□□□□□ -1.21
VPS39-207ENST00000563692 IL1F10Q8WWZ1 152 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 TMEM230Q96A57 120 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 GALMQ96C23 342 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 CABLES2Q9BTV7 478 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 SLC5A7Q9GZV3 580 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 NCOR1P1Q9H4R4 102 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 METTL8Q9H825 291 aaKnown RBP7.47□□□□□ -1.21
VPS39-207ENST00000563692 TAF9BQ9HBM6 251 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 BARX1Q9HBU1 254 aaPredicted RBP7.47□□□□□ -1.21
VPS39-207ENST00000563692 RAB18Q9NP72 206 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 OPN4Q9UHM6 478 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 OR2W1Q9Y3N9 320 aa7.47□□□□□ -1.21
VPS39-207ENST00000563692 PRR14LQ5THK1 2151 aa7.46□□□□□ -1.21
VPS39-207ENST00000563692 SETD2Q9BYW2 2564 aaPredicted RBP7.46□□□□□ -1.21
VPS39-207ENST00000563692 FLNAP21333 2647 aaKnown RBP7.46□□□□□ -1.22
VPS39-207ENST00000563692 TRAV38-1A0A0B4J264 116 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 C13orf42A0A1B0GVH6 325 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 C5orf51A6NDU8 294 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 FAM25EA8MYX2 175 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 C3orf80F5H4A9 247 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 GPR31O00270 319 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 TUSC2O75896 110 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 SIX6O95475 246 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 HEXAP06865 529 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 EGR1P18146 543 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 CEACAM6P40199 344 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms