RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 HILPDAQ9Y5L2 63 aa16.04■□□□□ 0.16
CPSF1-209ENST00000532725 A0A0B4J203 849 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 LOC100506127A0A0U1RQW1 187 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 SMIM30A4D0T7 59 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 BUB1B-PAK6H3BSN5 160 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 J3QR06 171 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 F2RL2O00254 374 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 IGHV3-7P01780 117 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 CRYBA1P05813 215 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 SLC2A2P11168 524 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-209ENST00000532725 VEGFCP49767 419 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 EFNB2P52799 333 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 FAM189A2Q15884 450 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 AWAT1Q58HT5 328 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 GDPGP1Q6ZNW5 385 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 UBALD1Q8TB05 177 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 NDNFQ8TB73 568 aa16.03■□□□□ 0.16
CPSF1-209ENST00000532725 LEUTXA8MZ59 168 aa16.02■□□□□ 0.16
CPSF1-209ENST00000532725 NAPSAO96009 420 aa16.02■□□□□ 0.16
CPSF1-209ENST00000532725 DYNLT3P51808 116 aa16.02■□□□□ 0.16
CPSF1-209ENST00000532725 C6orf183Q5T699 404 aa16.02■□□□□ 0.16
CPSF1-209ENST00000532725 TRAT1Q6PIZ9 186 aa16.02■□□□□ 0.16
CPSF1-209ENST00000532725 C12orf54Q6X4T0 127 aa16.02■□□□□ 0.16
CPSF1-209ENST00000532725 Q6ZTK2 550 aa16.02■□□□□ 0.16
CPSF1-209ENST00000532725 CREB3L1Q96BA8 519 aa16.02■□□□□ 0.16
CPSF1-209ENST00000532725 MMP28Q9H239 520 aa16.02■□□□□ 0.16
CPSF1-209ENST00000532725 NDUFA7O95182 113 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 HBZP02008 142 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 CLEC2LP0C7M8 214 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 RAB6AP20340 208 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 LY6EQ16553 131 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 PLA1AQ53H76 456 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 PLAC9Q5JTB6 97 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 FAM53AQ6NSI3 398 aaPredicted RBP16.01■□□□□ 0.15
CPSF1-209ENST00000532725 Q6ZPA2 131 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 C5orf24Q7Z6I8 188 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 ZNF554Q86TJ5 538 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 OR56B1Q8NGI3 324 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 OR1L1Q8NH94 360 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 PTX4Q96A99 478 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 ARHGAP5-AS1Q96IT6 56 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 PECRQ9BY49 303 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 TAF9BQ9HBM6 251 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 GFOD1Q9NXC2 390 aa16.01■□□□□ 0.15
CPSF1-209ENST00000532725 SDCBPO00560 298 aaPredicted RBP16■□□□□ 0.15
CPSF1-209ENST00000532725 SPINT2O43291 252 aa16■□□□□ 0.15
CPSF1-209ENST00000532725 TIMM50Q3ZCQ8 353 aa16■□□□□ 0.15
CPSF1-209ENST00000532725 ZNF880Q6PDB4 577 aa16■□□□□ 0.15
CPSF1-209ENST00000532725 CCBE1Q6UXH8 406 aaPredicted RBP16■□□□□ 0.15
CPSF1-209ENST00000532725 RIMS4Q9H426 269 aaPredicted RBP16■□□□□ 0.15
CPSF1-209ENST00000532725 KCNIP1Q9NZI2 227 aa16■□□□□ 0.15
CPSF1-209ENST00000532725 AK3Q9UIJ7 227 aa16■□□□□ 0.15
CPSF1-209ENST00000532725 TRBV6-6A0A0A6YYG2 114 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 IGHV3-43A0A0B4J1X8 118 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 RAB27BO00194 218 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 SMIM18P0DKX4 95 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 IGHV3-43DP0DP04 118 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 CEACAM3P40198 252 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 MXD1Q05195 221 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 MOGAT2Q3SYC2 334 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 Q3ZCU0 254 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 TPTE2P1Q5T6R2 138 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 SFXN4Q6P4A7 337 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 LINC00311Q8N616 119 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 C8orf31Q8N9H6 132 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 RAB9BQ9NP90 201 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 ABCB10Q9NRK6 738 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 DAPK2Q9UIK4 370 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 KCNK7Q9Y2U2 307 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 MMP24Q9Y5R2 645 aa15.99■□□□□ 0.15
CPSF1-209ENST00000532725 A0A1W2PPE3 182 aa15.98■□□□□ 0.15
CPSF1-209ENST00000532725 A6NDX4 124 aa15.98■□□□□ 0.15
CPSF1-209ENST00000532725 OOSP1A8MZH6 123 aa15.98■□□□□ 0.15
CPSF1-209ENST00000532725 AIREO43918 545 aa15.98■□□□□ 0.15
CPSF1-209ENST00000532725 MDKP21741 143 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-209ENST00000532725 GNG10P50151 68 aa15.98■□□□□ 0.15
CPSF1-209ENST00000532725 RAG2P55895 527 aa15.98■□□□□ 0.15
CPSF1-209ENST00000532725 TMEM30BQ3MIR4 351 aa15.98■□□□□ 0.15
CPSF1-209ENST00000532725 Q6ZSV7 163 aa15.98■□□□□ 0.15
CPSF1-209ENST00000532725 PRR18Q8N4B5 295 aa15.98■□□□□ 0.15
CPSF1-209ENST00000532725 OR10R2Q8NGX6 335 aa15.98■□□□□ 0.15
CPSF1-209ENST00000532725 OR4F5Q8NH21 305 aa15.98■□□□□ 0.15
CPSF1-209ENST00000532725 HDHD3Q9BSH5 251 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-209ENST00000532725 TCF19Q9Y242 345 aa15.98■□□□□ 0.15
CPSF1-209ENST00000532725 METTL21EPA6NDL7 271 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 TSPAN9O75954 239 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 TGFBR1P36897 503 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 ZNF134P52741 427 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 HTD2P86397 168 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 HMGN3Q15651 99 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 OLFML2AQ68BL7 652 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 DHRS7BQ6IAN0 325 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-209ENST00000532725 LIAT1Q6ZQX7 453 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 ZNF439Q8NDP4 499 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 OR13F1Q8NGS4 319 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 RAB3CQ96E17 227 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 OCSTAMPQ9BR26 566 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 OR2S2Q9NQN1 319 aa15.97■□□□□ 0.15
CPSF1-209ENST00000532725 AMMECR1Q9Y4X0 333 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-209ENST00000532725 A0A1B0GUS0 222 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms