RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 GLRXP35754 106 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 VDAC2P45880 294 aaPredicted RBP2.46□□□□□ -2.02
CD44-229ENST00000528672 GABRA2P47869 451 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 GZMMP51124 257 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 RAB5CP51148 216 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 CAV1Q03135 178 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 PPP1R1AQ13522 171 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 EBPQ15125 230 aaKnown RBP2.46□□□□□ -2.02
CD44-229ENST00000528672 LPAL2Q16609 132 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 Q1RN00 199 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 HIGD2BQ4VC39 106 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 PRR30Q53SZ7 412 aaPredicted RBP2.46□□□□□ -2.02
CD44-229ENST00000528672 CLEC12AQ5QGZ9 265 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 C1orf100Q5SVJ3 147 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 COL5A1-AS1Q5SY13 56 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 C6orf52Q5T4I8 152 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 OTPQ5XKR4 325 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 CGB2Q6NT52 195 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 SFXN4Q6P4A7 337 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 CNIH2Q6PI25 160 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 AGTRAPQ6RW13 159 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 FA2HQ7L5A8 372 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 PRSS41Q7RTY9 318 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 C6orf120Q7Z4R8 191 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 NAA40Q86UY6 237 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 CALHM3Q86XJ0 350 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 CDC20BQ86Y33 519 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 OSR2Q8N2R0 312 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 ZNF485Q8NCK3 441 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 MAPK1IP1LQ8NDC0 245 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 ZNF439Q8NDP4 499 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 OR6K6Q8NGW6 343 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 GTSF1Q8WW33 167 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 CYGBQ8WWM9 190 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 ASB13Q8WXK3 278 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 FGF14Q92915 247 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 CLDN23Q96B33 292 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 LRRC58Q96CX6 371 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 SLC35G5Q96KT7 338 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 LINC00052Q96N35 136 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 CCDC115Q96NT0 180 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 SMIM14Q96QK8 99 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 CDX2Q99626 313 aaPredicted RBP2.46□□□□□ -2.02
CD44-229ENST00000528672 RASL11BQ9BPW5 248 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 HSPB9Q9BQS6 159 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 FAAP24Q9BTP7 215 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 EBPLQ9BY08 206 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 NKX6-2Q9C056 277 aaPredicted RBP2.46□□□□□ -2.02
CD44-229ENST00000528672 TMEM126AQ9H061 195 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 CDC42EP4Q9H3Q1 356 aaKnown RBP2.46□□□□□ -2.02
CD44-229ENST00000528672 EFCAB1Q9HAE3 211 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 ACOT13Q9NPJ3 140 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 PLSCR3Q9NRY6 295 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 IDI2-AS1Q9NZ38 188 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 RAB22AQ9UL26 194 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 TNFSF18Q9UNG2 199 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 ASF1AQ9Y294 204 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 CACNA1FO60840 1977 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 YLPM1P49750 1951 aaKnown RBP2.46□□□□□ -2.02
CD44-229ENST00000528672 PRDM15P57071 1507 aaPredicted RBP2.46□□□□□ -2.02
CD44-229ENST00000528672 AKAP12Q02952 1782 aa2.46□□□□□ -2.02
CD44-229ENST00000528672 FANCAO15360 1455 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 SCAF11Q99590 1463 aaKnown RBP2.45□□□□□ -2.02
CD44-229ENST00000528672 NOTCH3Q9UM47 2321 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 IGKV3D-15A0A087WSY6 115 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 A0A087WUU8 490 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 BORCS7-ASMTA0A0B4J1R7 106 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 ZNF816-ZNF321PA0A0X1KG74 233 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 TMEM72A0PK05 275 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 TMEM218A2RU14 115 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 TMEM189A5PLL7 270 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 HMGB3O15347 200 aaKnown RBP2.45□□□□□ -2.02
CD44-229ENST00000528672 SERF1AO75920 110 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 HPRT1P00492 218 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 GCGP01275 180 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 IFNA7P01567 189 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 CD8AP01732 235 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 IGHV3-48P01763 117 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 HBE1P02100 147 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 OPN1SWP03999 348 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 FABP3P05413 133 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 CRYBA1P05813 215 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 PFN1P07737 140 aaKnown RBP2.45□□□□□ -2.02
CD44-229ENST00000528672 SULT1A3P0DMM9 295 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 SULT1A4P0DMN0 295 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 GATA2P23769 480 aaPredicted RBP2.45□□□□□ -2.02
CD44-229ENST00000528672 CD34P28906 385 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 SHC1P29353 583 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 GPR6P46095 362 aaPredicted RBP2.45□□□□□ -2.02
CD44-229ENST00000528672 OR1E2P47887 323 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 REG1BP48304 166 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 HCCSP53701 268 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 SUB1P53999 127 aaKnown RBP eCLIP2.45□□□□□ -2.02
CD44-229ENST00000528672 DLX1P56177 255 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 TAS2R30P59541 319 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 RPS28P62857 69 aaKnown RBP2.45□□□□□ -2.02
CD44-229ENST00000528672 HIST1H3AP68431 136 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 ARG2P78540 354 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 RHOGP84095 191 aa2.45□□□□□ -2.02
CD44-229ENST00000528672 H3F3AP84243 136 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms