RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 HTR4Q13639 388 aa1.36□□□□□ -2.19
CD44-215ENST00000525241 AADACL4Q5VUY2 407 aa1.36□□□□□ -2.19
CD44-215ENST00000525241 OR9I1Q8NGQ6 314 aa1.36□□□□□ -2.19
CD44-215ENST00000525241 SUN5Q8TC36 379 aa1.36□□□□□ -2.19
CD44-215ENST00000525241 GTF2H4Q92759 462 aa1.36□□□□□ -2.19
CD44-215ENST00000525241 C19orf60Q96EN9 201 aa1.36□□□□□ -2.19
CD44-215ENST00000525241 FAAP24Q9BTP7 215 aa1.36□□□□□ -2.19
CD44-215ENST00000525241 METTL8Q9H825 291 aaKnown RBP1.36□□□□□ -2.19
CD44-215ENST00000525241 MAT2BQ9NZL9 334 aa1.36□□□□□ -2.19
CD44-215ENST00000525241 STRCP1A6NGW2 1772 aa1.36□□□□□ -2.19
CD44-215ENST00000525241 PLXNA3P51805 1871 aa1.35□□□□□ -2.19
CD44-215ENST00000525241 TOR1AO14656 332 aa1.35□□□□□ -2.19
CD44-215ENST00000525241 POLR3GO15318 223 aaPredicted RBP1.35□□□□□ -2.19
CD44-215ENST00000525241 RAB36O95755 333 aa1.35□□□□□ -2.19
CD44-215ENST00000525241 GABRA3P34903 492 aa1.35□□□□□ -2.19
CD44-215ENST00000525241 UBE2KP61086 200 aa1.35□□□□□ -2.19
CD44-215ENST00000525241 TMEM25Q86YD3 366 aa1.35□□□□□ -2.19
CD44-215ENST00000525241 MUC15Q8N387 334 aa1.35□□□□□ -2.19
CD44-215ENST00000525241 FAM45AQ8TCE6 357 aa1.35□□□□□ -2.19
CD44-215ENST00000525241 DTD1Q8TEA8 209 aa1.35□□□□□ -2.19
CD44-215ENST00000525241 CATSPER2Q96P56 530 aa1.35□□□□□ -2.19
CD44-215ENST00000525241 FAM206AQ9NX38 181 aa1.35□□□□□ -2.19
CD44-215ENST00000525241 WASHC3Q9Y3C0 194 aa1.35□□□□□ -2.19
CD44-215ENST00000525241 RAB3GAP2Q9H2M9 1393 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 EIF4G1Q04637 1599 aaKnown RBP1.34□□□□□ -2.19
CD44-215ENST00000525241 PTPRKQ15262 1439 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 C19orf71A6NCJ1 209 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 H3BRN7 92 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 PSMD11O00231 422 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 FABP7O15540 132 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 TRAPPC3O43617 180 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 CCL2P13500 99 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 LCN1P31025 176 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 EBLN2Q6P2I7 272 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 ST13P4Q8IZP2 240 aaPredicted RBP1.34□□□□□ -2.19
CD44-215ENST00000525241 TCAIMQ8N3R3 496 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 SLC19A3Q9BZV2 496 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 GOLPH3Q9H4A6 298 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 XKR8Q9H6D3 395 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 SNX24Q9Y343 169 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 MINOS1-NBL1R4GNA1 71 aa1.34□□□□□ -2.19
CD44-215ENST00000525241 HMCN1Q96RW7 5635 aa1.34□□□□□ -2.2
CD44-215ENST00000525241 UBR4Q5T4S7 5183 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 MUC21A0A0G2JKD1 596 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 MUC21A0A140T8X8 626 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 GOLGA8IPA6NC78 632 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 CRXO43186 299 aaPredicted RBP1.33□□□□□ -2.2
CD44-215ENST00000525241 S100A9P06702 114 aaKnown RBP1.33□□□□□ -2.2
CD44-215ENST00000525241 AKR1C4P17516 323 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 UGT2B10P36537 528 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 NUP62P37198 522 aaPredicted RBP1.33□□□□□ -2.2
CD44-215ENST00000525241 SPAM1P38567 509 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 ZNF117Q03924 483 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 BSPH1Q075Z2 132 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 PRDX4Q13162 271 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 SKP2Q13309 424 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 PSG3Q16557 428 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 BSXQ3C1V8 233 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 FBXO48Q5FWF7 155 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 AHSA2Q719I0 299 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 ERMNQ8TAM6 284 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 LRRC20Q8TCA0 184 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 GALMQ96C23 342 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 OR51E2Q9H255 320 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 C11orf49Q9H6J7 331 aa1.33□□□□□ -2.2
CD44-215ENST00000525241 HELZ2Q9BYK8 2649 aaKnown RBP1.33□□□□□ -2.2
CD44-215ENST00000525241 CHD8Q9HCK8 2581 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 LOC100506127A0A0U1RQW1 187 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 ZNF860A6NHJ4 632 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 FNDC10F2Z333 226 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 F8VP50 259 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 CST4P01036 141 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 OR4A8P0C604 315 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 KCNJ3P48549 501 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 OR2B6P58173 313 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 OR10A3P58181 314 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 TNNC1P63316 161 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 DEFA6Q01524 100 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 PAFAH1B3Q15102 231 aaKnown RBP1.32□□□□□ -2.2
CD44-215ENST00000525241 PDGFRLQ15198 375 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 ZBTB6Q15916 424 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 Q3ZCU0 254 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 MRPL52Q86TS9 123 aaKnown RBP1.32□□□□□ -2.2
CD44-215ENST00000525241 C2orf73Q8N5S3 287 aaPredicted RBP1.32□□□□□ -2.2
CD44-215ENST00000525241 OR5D18Q8NGL1 313 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 OR11L1Q8NGX0 322 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 TMEM239Q8WW34 195 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 IFT81Q8WYA0 676 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 MRAP2Q96G30 205 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 MSANTD3Q96H12 275 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 SIKE1Q9BRV8 207 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 UPK3BQ9BT76 320 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 C16orf95Q9H693 158 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 HAUS4Q9H6D7 363 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 AGPAT3Q9NRZ7 376 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 POFUT2Q9Y2G5 429 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 ERCC6L2Q5T890 1561 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 ABCB11O95342 1321 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 PTPRJQ12913 1337 aa1.32□□□□□ -2.2
CD44-215ENST00000525241 OTOFQ9HC10 1997 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms