RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 EXT1Q16394 746 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 PLPPR5Q32ZL2 321 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 ACSF3Q4G176 576 aaPredicted RBP8.23□□□□□ -1.09
HDAC3-205ENST00000469550 PHLDA2Q53GA4 152 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 TSPO2Q5TGU0 170 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 ZNF787Q6DD87 383 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 FOXL2NBQ6ZUU3 175 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 ZNF100Q8IYN0 542 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 OR5L1Q8NGL2 311 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 POC1BQ8TC44 478 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 TMEM171Q8WVE6 324 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 HIST1H2BLQ99880 126 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 ACTR3CQ9C0K3 210 aaPredicted RBP8.23□□□□□ -1.09
HDAC3-205ENST00000469550 TMEM222Q9H0R3 208 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 CDH20Q9HBT6 801 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 ZNF286AQ9HBT8 521 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 PIGLQ9Y2B2 252 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 URGCP-MRPS24S4R325 110 aa8.23□□□□□ -1.09
HDAC3-205ENST00000469550 IGLV3-12A0A075B6K2 115 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 C3orf85A0A1B0GTC6 90 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 A0A1B0GU03 582 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 NKX2-6A6NCS4 301 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 C2orf72A6NCS6 295 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 MPPED1O15442 326 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 OPN1MWP04001 364 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 OPN1MW2P0DN77 364 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 OPN1MW3P0DN78 364 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 MSR1P21757 451 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 FGF7P21781 194 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 FBXW4P57775 412 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 FOXL2P58012 376 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 FXYD4P59646 89 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 RPL23AP62750 156 aaKnown RBP8.22□□□□□ -1.09
HDAC3-205ENST00000469550 ID3Q02535 119 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 OR8G1Q15617 311 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 SSX2Q16385 188 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 COA6Q5JTJ3 125 aaKnown RBP8.22□□□□□ -1.09
HDAC3-205ENST00000469550 C10orf128Q5T292 105 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 FIP1L1Q6UN15 594 aaKnown RBP8.22□□□□□ -1.09
HDAC3-205ENST00000469550 H1FOOQ8IZA3 346 aaPredicted RBP8.22□□□□□ -1.09
HDAC3-205ENST00000469550 PIGTQ969N2 578 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 LURAP1Q96LR2 239 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 SSX3Q99909 188 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 CISD1Q9NZ45 108 aaKnown RBP8.22□□□□□ -1.09
HDAC3-205ENST00000469550 MYO9AB2RTY4 2548 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 NOTCH2Q04721 2471 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 CACNA1DQ01668 2161 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 A8MWP6 167 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 ATXN8OSP0DMR3 200 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 NDUFB7P17568 137 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 OPRM1P35372 400 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 CD200P41217 278 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 GUCA1AP43080 201 aaPredicted RBP8.22□□□□□ -1.09
HDAC3-205ENST00000469550 TAS2R30P59541 319 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 HERV-K104P61576 105 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 VAMP2P63027 116 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 IL24Q13007 206 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 RSPO1Q2MKA7 263 aaPredicted RBP8.22□□□□□ -1.09
HDAC3-205ENST00000469550 FAM90A2PQ658T7 463 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 TMEM211Q6ICI0 200 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 TMEM183AQ8IXX5 376 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 CMTM1Q8IZ96 169 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 OR5C1Q8NGR4 320 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 TP53RKQ96S44 253 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 P2RX4Q99571 388 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 IL36GQ9NZH8 169 aa8.22□□□□□ -1.09
HDAC3-205ENST00000469550 AQP7P3A6NL99 342 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 DFFBO76075 338 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 BTF3P20290 206 aaKnown RBP8.21□□□□□ -1.09
HDAC3-205ENST00000469550 COL8A1P27658 744 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 ASCL1P50553 236 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 Q0VFX4 171 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 ENDOGQ14249 297 aaKnown RBP8.21□□□□□ -1.09
HDAC3-205ENST00000469550 CNN3Q15417 329 aaKnown RBP8.21□□□□□ -1.09
HDAC3-205ENST00000469550 CARD17Q5XLA6 110 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 ABLIM2Q6H8Q1 611 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 Q6ZS49 121 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 ODF3L1Q8IXM7 274 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 DMRTC2Q8IXT2 367 aaPredicted RBP8.21□□□□□ -1.09
HDAC3-205ENST00000469550 OR11L1Q8NGX0 322 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 NEU1Q99519 415 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 PYGO2Q9BRQ0 406 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 NDUFAF3Q9BU61 184 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 GLRX2Q9NS18 164 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 SLC7A11Q9UPY5 501 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 RFNGQ9Y644 331 aa8.21□□□□□ -1.09
HDAC3-205ENST00000469550 ITPR2Q14571 2701 aa8.21□□□□□ -1.1
HDAC3-205ENST00000469550 A0A087WZY1 265 aa8.21□□□□□ -1.1
HDAC3-205ENST00000469550 F5H5K5 113 aa8.21□□□□□ -1.1
HDAC3-205ENST00000469550 GCGP01275 180 aa8.21□□□□□ -1.1
HDAC3-205ENST00000469550 PPYP01298 95 aa8.21□□□□□ -1.1
HDAC3-205ENST00000469550 AADACP22760 399 aa8.21□□□□□ -1.1
HDAC3-205ENST00000469550 NPBWR2P48146 333 aa8.21□□□□□ -1.1
HDAC3-205ENST00000469550 DYNLT3P51808 116 aa8.21□□□□□ -1.1
HDAC3-205ENST00000469550 CEBPGP53567 150 aa8.21□□□□□ -1.1
HDAC3-205ENST00000469550 PMS2P11Q13670 270 aa8.21□□□□□ -1.1
HDAC3-205ENST00000469550 SRSF7Q16629 238 aaKnown RBP eCLIP8.21□□□□□ -1.1
HDAC3-205ENST00000469550 PDZD11Q5EBL8 140 aa8.21□□□□□ -1.1
HDAC3-205ENST00000469550 DMRTC1Q5HYR2 192 aa8.21□□□□□ -1.1
HDAC3-205ENST00000469550 ZNF324BQ6AW86 544 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms