RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PLSCR3Q9NRY6 295 aa10.42□□□□□ -0.74
HMGB3-204ENST00000448905 TAS2R4Q9NYW5 299 aa10.42□□□□□ -0.74
HMGB3-204ENST00000448905 GNG12Q9UBI6 72 aa10.42□□□□□ -0.74
HMGB3-204ENST00000448905 CKLFQ9UBR5 152 aa10.42□□□□□ -0.74
HMGB3-204ENST00000448905 ZNF256Q9Y2P7 627 aaPredicted RBP10.42□□□□□ -0.74
HMGB3-204ENST00000448905 C15orf65H3BRN8 121 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 AIPO00170 330 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 LY86O95711 162 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 IGF1P05019 195 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 BDKRB2P30411 391 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 DEFB136Q30KP8 78 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 C6orf183Q5T699 404 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 FAM27D1Q5T7N8 215 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 DDI2Q5TDH0 399 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 ZFP1Q6P2D0 407 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 SLC25A48Q6ZT89 311 aaKnown RBP10.41□□□□□ -0.74
HMGB3-204ENST00000448905 OR11H1Q8NG94 326 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 OR51A2Q8NGJ7 313 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 OR1N2Q8NGR9 330 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 PYDC1Q8WXC3 89 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 TMEM106AQ96A25 262 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 MRPS24Q96EL2 167 aaKnown RBP10.41□□□□□ -0.74
HMGB3-204ENST00000448905 UBE2E2Q96LR5 201 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 KCTD7Q96MP8 289 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 PRR25Q96S07 402 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 ASCL2Q99929 193 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 SCOCQ9UIL1 159 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 SMAD5-AS1Q9Y6J3 95 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 TENM3Q9P273 2699 aa10.41□□□□□ -0.74
HMGB3-204ENST00000448905 OR8U8P0C7N1 319 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 SERPINA2P20848 420 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 CHATP28329 748 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 SLC22A6Q4U2R8 563 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 TRAT1Q6PIZ9 186 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 ZNF497Q6ZNH5 498 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 ZNF429Q86V71 674 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 CBR4Q8N4T8 237 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 TMEM104Q8NE00 496 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 OR52I1Q8NGK6 324 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 MRPS18AQ9NVS2 196 aaKnown RBP10.4□□□□□ -0.74
HMGB3-204ENST00000448905 KCNIP1Q9NZI2 227 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 ZNF107Q9UII5 783 aaPredicted RBP10.4□□□□□ -0.74
HMGB3-204ENST00000448905 ZNF580Q9UK33 172 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 VSIG4Q9Y279 399 aa10.4□□□□□ -0.74
HMGB3-204ENST00000448905 IGHV3-43A0A0B4J1X8 118 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 CA11O75493 328 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 IGHV3-43DP0DP04 118 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 PSMB8P28062 276 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 GTF2A1P52655 376 aaPredicted RBP10.39□□□□□ -0.75
HMGB3-204ENST00000448905 F2RL1P55085 397 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 MED21Q13503 144 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 RIPK1Q13546 671 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 SYT6Q5T7P8 510 aaPredicted RBP10.39□□□□□ -0.75
HMGB3-204ENST00000448905 PRR18Q8N4B5 295 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 FAM71E2Q8N5Q1 922 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 UBALD1Q8TB05 177 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 ZNF251Q9BRH9 671 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 C9orf16Q9BUW7 83 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 GHITMQ9H3K2 345 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 BABAM2Q9NXR7 383 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 ETAA1Q9NY74 926 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 AASSQ9UDR5 926 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 LRRC42Q9Y546 428 aa10.39□□□□□ -0.75
HMGB3-204ENST00000448905 LOC100130705A0A1B0GUX0 176 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 IRGMA1A4Y4 181 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 ZNF736B4DX44 427 aaPredicted RBP10.38□□□□□ -0.75
HMGB3-204ENST00000448905 LANCL1O43813 399 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 GLAP06280 429 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 GABRB1P18505 474 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 DCKP27707 260 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 ZNF137PP52743 207 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 CFHR3Q02985 330 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 ZNF616Q08AN1 781 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 MMDQ15546 238 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 CT45A1Q5HYN5 189 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 LIN54Q6MZP7 749 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 CT45A3Q8NHU0 189 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 ZNF184Q99676 751 aaPredicted RBP10.38□□□□□ -0.75
HMGB3-204ENST00000448905 HSPB9Q9BQS6 159 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 OR2S2Q9NQN1 319 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 PEX16Q9Y5Y5 336 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 DSCAML1Q8TD84 2053 aa10.38□□□□□ -0.75
HMGB3-204ENST00000448905 C12orf77C9JDV5 145 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 RGS11O94810 467 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 HBZP02008 142 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 MYL12AP19105 171 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 ZNF134P52741 427 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 RUNX1Q01196 453 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 FHL3Q13643 280 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 NKAPLQ5M9Q1 402 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 RAB12Q6IQ22 244 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 ZNF491Q8N8L2 437 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 OR10V1Q8NGI7 309 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 OR4K15Q8NH41 348 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 FGF20Q9NP95 211 aaPredicted RBP10.37□□□□□ -0.75
HMGB3-204ENST00000448905 ZNF581Q9P0T4 197 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 KIAA1456Q9P272 454 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 WSB1Q9Y6I7 421 aa10.37□□□□□ -0.75
HMGB3-204ENST00000448905 TRAV41A0A0B4J266 112 aa10.36□□□□□ -0.75
HMGB3-204ENST00000448905 DYNC1I1O14576 645 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms