RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 RPSAP08865 295 aaKnown RBP6.29□□□□□ -1.4
VIM-202ENST00000421459 SNRPBP14678 240 aaKnown RBP6.29□□□□□ -1.4
VIM-202ENST00000421459 SPNP16150 400 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 RAB3AP20336 220 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 SERPINA2P20848 420 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 VDAC1P21796 283 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 PSMB8P28062 276 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 CHATP28329 748 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 CD1BP29016 333 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 SOX6P35712 828 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 GP2P55259 537 aaKnown RBP6.29□□□□□ -1.4
VIM-202ENST00000421459 SNRPGP62308 76 aaKnown RBP6.29□□□□□ -1.4
VIM-202ENST00000421459 ADARB1P78563 741 aaKnown RBP6.29□□□□□ -1.4
VIM-202ENST00000421459 ATAD3CQ5T2N8 411 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 ZNF529Q6P280 563 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 ZFP1Q6P2D0 407 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 ASCL4Q6XD76 172 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 SLC16A12Q6ZSM3 486 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 FAM71E2Q8N5Q1 922 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 LINC00311Q8N616 119 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 ZNF491Q8N8L2 437 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 ZNF439Q8NDP4 499 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 OR10A7Q8NGE5 316 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 OR4K15Q8NH41 348 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 OR52N1Q8NH53 320 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 OR1L1Q8NH94 360 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 DCUN1D4Q92564 292 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 DLX4Q92988 240 aaPredicted RBP6.29□□□□□ -1.4
VIM-202ENST00000421459 S100A14Q9HCY8 104 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 ERVK13-1Q9NX77 482 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 GFOD1Q9NXC2 390 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 ENOPH1Q9UHY7 261 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 SIRT4Q9Y6E7 314 aaPredicted RBP6.29□□□□□ -1.4
VIM-202ENST00000421459 SMAD5-AS1Q9Y6J3 95 aa6.29□□□□□ -1.4
VIM-202ENST00000421459 TMEM30CPA0ZSE6 113 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 MAGEA13PA6NCF6 341 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 TRIM64CA6NLI5 447 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 TMEM212A6NML5 194 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 EI24O14681 340 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 MAGEB3O15480 346 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 IGF1P05019 195 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 ALPLP05186 524 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 FRMD6-AS1P0C7T7 363 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 GABRB1P18505 474 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 GZMHP20718 246 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 PPIFP30405 207 aaKnown RBP6.28□□□□□ -1.4
VIM-202ENST00000421459 SLURP1P55000 103 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 RBM11P57052 281 aaKnown RBP6.28□□□□□ -1.4
VIM-202ENST00000421459 PAX5Q02548 391 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 GNMTQ14749 295 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 RCN1Q15293 331 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 SLC25A30Q5SVS4 291 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 SYT6Q5T7P8 510 aaPredicted RBP6.28□□□□□ -1.4
VIM-202ENST00000421459 ZNF497Q6ZNH5 498 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 SLC25A48Q6ZT89 311 aaKnown RBP6.28□□□□□ -1.4
VIM-202ENST00000421459 HAPLN4Q86UW8 402 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 OR52I1Q8NGK6 324 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 OR13C5Q8NGS8 318 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 MYOZ3Q8TDC0 251 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 NEK7Q8TDX7 302 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 TRUB1Q8WWH5 349 aaKnown RBP6.28□□□□□ -1.4
VIM-202ENST00000421459 PYDC1Q8WXC3 89 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 CENPNQ96H22 339 aaPredicted RBP6.28□□□□□ -1.4
VIM-202ENST00000421459 JAM3Q9BX67 310 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 GON7Q9BXV9 100 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 METTL9Q9H1A3 318 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 ZNF107Q9UII5 783 aaPredicted RBP6.28□□□□□ -1.4
VIM-202ENST00000421459 FBXO7Q9Y3I1 522 aa6.28□□□□□ -1.4
VIM-202ENST00000421459 AIPO00170 330 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 ATP6V0E1O15342 81 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 SAP30O75446 220 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 HBZP02008 142 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 CSTBP04080 98 aaKnown RBP6.27□□□□□ -1.41
VIM-202ENST00000421459 LYL1P12980 280 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 RCC1P18754 421 aaPredicted RBP6.27□□□□□ -1.41
VIM-202ENST00000421459 ZNF93P35789 620 aaPredicted RBP6.27□□□□□ -1.41
VIM-202ENST00000421459 KCNJ3P48549 501 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 RAB9AP51151 201 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 GBX2P52951 348 aaPredicted RBP6.27□□□□□ -1.41
VIM-202ENST00000421459 ZNF616Q08AN1 781 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 MMDQ15546 238 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 SLC22A6Q4U2R8 563 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 DDI2Q5TDH0 399 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 MEDAGQ5VYS4 303 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 TMEM65Q6PI78 240 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 ADAMTSL5Q6ZMM2 481 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 SYS1Q8N2H4 156 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 C8orf31Q8N9H6 132 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 OR52L2PQ8NGH6 319 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 OR52M1Q8NGK5 317 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 ANKRD60Q9BZ19 345 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 IFT22Q9H7X7 185 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 ISYNA1Q9NPH2 558 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 PARP11Q9NR21 331 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 GNG12Q9UBI6 72 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 NKX1-2Q9UD57 310 aaPredicted RBP6.27□□□□□ -1.41
VIM-202ENST00000421459 STAB2Q8WWQ8 2551 aa6.27□□□□□ -1.41
VIM-202ENST00000421459 IGHV4OR15-8A0A075B7B6 117 aa6.26□□□□□ -1.41
VIM-202ENST00000421459 A0A087WW49 117 aa6.26□□□□□ -1.41
VIM-202ENST00000421459 IGHV7-81A0A0B4J1V7 117 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms