RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 MT-ND4P03905 459 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 FAM90A15PP0C7V4 464 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 FAM90A13PP0C7W8 464 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 FAM90A14PP0C7W9 464 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 FAM90A24PP0C7X0 464 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 UBBP0CG47 229 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 CALRP27797 417 aaKnown RBP12.66□□□□□ -0.38
LIG3-215ENST00000592690 UNC119Q13432 240 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 HLA-DRB5Q30154 266 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 SHISA2Q6UWI4 295 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 CCBE1Q6UXH8 406 aaPredicted RBP12.66□□□□□ -0.38
LIG3-215ENST00000592690 SPARTQ8N0X7 666 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 UBALD1Q8TB05 177 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 LEAP2Q969E1 77 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 ABCB10Q9NRK6 738 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 NDUFB11Q9NX14 153 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 RNF114Q9Y508 228 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 PEX16Q9Y5Y5 336 aa12.66□□□□□ -0.38
LIG3-215ENST00000592690 C15orf65H3BRN8 121 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 TOR1AO14656 332 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 FUT3P21217 361 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 DYNLT3P51808 116 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 KRTAP10-3P60369 221 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 RPS27AP62979 156 aaKnown RBP12.65□□□□□ -0.38
LIG3-215ENST00000592690 RBM39Q14498 530 aaKnown RBP12.65□□□□□ -0.38
LIG3-215ENST00000592690 P2RY14Q15391 338 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 UBE2UQ5VVX9 321 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 TMEM219Q86XT9 240 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 SVOPQ8N4V2 548 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 OR6M1Q8NGM8 313 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 OR4K15Q8NH41 348 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 OR9G1Q8NH87 305 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 TMEM59Q9BXS4 323 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 C16orf95Q9H693 158 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 ETAA1Q9NY74 926 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 DPM3Q9P2X0 92 aa12.65□□□□□ -0.38
LIG3-215ENST00000592690 UBE2QL1A1L167 161 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 A6NDX4 124 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 TMEM14DPA8MWL7 114 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 LEUTXA8MZ59 168 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 LY6LH3BQJ8 138 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 BUB1B-PAK6H3BSN5 160 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 F2RL2O00254 374 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 SLC17A2O00624 439 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 PDCD6O75340 191 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 GNG10P50151 68 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 PRRX1P54821 245 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 PROK1P58294 105 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 QRFPP83859 136 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 NKAPLQ5M9Q1 402 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 LIAT1Q6ZQX7 453 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 GAPTQ8N292 157 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 ARL11Q969Q4 196 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 NICN1Q9BSH3 213 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 YTHDF1Q9BYJ9 559 aaKnown RBP12.64□□□□□ -0.39
LIG3-215ENST00000592690 MMP28Q9H239 520 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 PLGRKTQ9HBL7 147 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 PSG11Q9UQ72 335 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 SIGLEC9Q9Y336 463 aa12.64□□□□□ -0.39
LIG3-215ENST00000592690 A0A0A6YYD4 124 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 A0A1W2PPE3 182 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 SHISA3A0PJX4 238 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 J3QR06 171 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 BPNT1O95861 308 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 GZMHP20718 246 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 PSMB9P28065 219 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 CHATP28329 748 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 CLDN12P56749 244 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 FBLN7Q53RD9 439 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 TPTE2P1Q5T6R2 138 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 SYT6Q5T7P8 510 aaPredicted RBP12.63□□□□□ -0.39
LIG3-215ENST00000592690 FAM53AQ6NSI3 398 aaPredicted RBP12.63□□□□□ -0.39
LIG3-215ENST00000592690 CD200R1LQ6Q8B3 271 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 OR10A7Q8NGE5 316 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 KCNG3Q8TAE7 436 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 SULT4A1Q9BR01 284 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 TM2D1Q9BX74 207 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 RAB18Q9NP72 206 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 LRRC42Q9Y546 428 aa12.63□□□□□ -0.39
LIG3-215ENST00000592690 IGHV3-43A0A0B4J1X8 118 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 TRDV1A0A1B0GX56 115 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 C12orf77C9JDV5 145 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 CCRL2O00421 344 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 SDCBPO00560 298 aaPredicted RBP12.62□□□□□ -0.39
LIG3-215ENST00000592690 ORC5O43913 435 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 GLAP06280 429 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 IGHV3-43DP0DP04 118 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 RCC1P18754 421 aaPredicted RBP12.62□□□□□ -0.39
LIG3-215ENST00000592690 CD24P25063 80 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 CEACAM3P40198 252 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 LOXL3P58215 753 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 RAB11BQ15907 218 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 ZNF773Q6PK81 442 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 OR4C13Q8NGP0 309 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 MRPL30Q8TCC3 161 aaKnown RBP12.62□□□□□ -0.39
LIG3-215ENST00000592690 RANBP3Q9H6Z4 567 aaPredicted RBP12.62□□□□□ -0.39
LIG3-215ENST00000592690 TRAPPC2LQ9UL33 140 aa12.62□□□□□ -0.39
LIG3-215ENST00000592690 TET2Q6N021 2002 aaPredicted RBP12.61□□□□□ -0.39
LIG3-215ENST00000592690 CA11O75493 328 aa12.61□□□□□ -0.39
LIG3-215ENST00000592690 ARSBP15848 533 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms