RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ZNF702PQ9H963 129 aa14.56□□□□□ -0.08
COL9A3-214ENST00000490398 ISYNA1Q9NPH2 558 aa14.56□□□□□ -0.08
COL9A3-214ENST00000490398 FBLN5Q9UBX5 448 aa14.56□□□□□ -0.08
COL9A3-214ENST00000490398 PSG11Q9UQ72 335 aa14.56□□□□□ -0.08
COL9A3-214ENST00000490398 DNAH3Q8TD57 4116 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 F2RL2O00254 374 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 TOR1AO14656 332 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 MPIG6BO95866 241 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 VSIG8P0DPA2 414 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 KIR2DS4P43632 304 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 EFNB2P52799 333 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 FABP5Q01469 135 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 SSX1Q16384 188 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 TPTE2P1Q5T6R2 138 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 ZNF596Q8TC21 504 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 NEK7Q8TDX7 302 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 MRPS24Q96EL2 167 aaKnown RBP14.55□□□□□ -0.08
COL9A3-214ENST00000490398 ZNF696Q9H7X3 374 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 PCDHB16Q9NRJ7 776 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 PEX16Q9Y5Y5 336 aa14.55□□□□□ -0.08
COL9A3-214ENST00000490398 IGHV3-43A0A0B4J1X8 118 aa14.54□□□□□ -0.08
COL9A3-214ENST00000490398 UBE2QL1A1L167 161 aa14.54□□□□□ -0.08
COL9A3-214ENST00000490398 IGHV3-43DP0DP04 118 aa14.54□□□□□ -0.08
COL9A3-214ENST00000490398 GNG10P50151 68 aa14.54□□□□□ -0.08
COL9A3-214ENST00000490398 BLCAPP62952 87 aa14.54□□□□□ -0.08
COL9A3-214ENST00000490398 UNC119Q13432 240 aa14.54□□□□□ -0.08
COL9A3-214ENST00000490398 TBCEQ15813 527 aaPredicted RBP14.54□□□□□ -0.08
COL9A3-214ENST00000490398 OR4K15Q8NH41 348 aa14.54□□□□□ -0.08
COL9A3-214ENST00000490398 OR9G1Q8NH87 305 aa14.54□□□□□ -0.08
COL9A3-214ENST00000490398 MMP28Q9H239 520 aa14.54□□□□□ -0.08
COL9A3-214ENST00000490398 ACOT13Q9NPJ3 140 aa14.54□□□□□ -0.08
COL9A3-214ENST00000490398 AK6Q9Y3D8 172 aaKnown RBP14.54□□□□□ -0.08
COL9A3-214ENST00000490398 A0A0A6YYD4 124 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 LEUTXA8MZ59 168 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 J3QR06 171 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 SLC22A1O15245 554 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 QRFPP83859 136 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 EMX1Q04741 257 aaPredicted RBP14.53□□□□□ -0.08
COL9A3-214ENST00000490398 P2RY14Q15391 338 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 GLT8D1Q68CQ7 371 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 LIAT1Q6ZQX7 453 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 GAPTQ8N292 157 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 OR4C13Q8NGP0 309 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 ARL11Q969Q4 196 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 NICN1Q9BSH3 213 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 RAB18Q9NP72 206 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 ETAA1Q9NY74 926 aa14.53□□□□□ -0.08
COL9A3-214ENST00000490398 SHISA3A0PJX4 238 aa14.52□□□□□ -0.09
COL9A3-214ENST00000490398 C12orf77C9JDV5 145 aa14.52□□□□□ -0.09
COL9A3-214ENST00000490398 MCRIP1C9JLW8 97 aa14.52□□□□□ -0.09
COL9A3-214ENST00000490398 AIPO00170 330 aa14.52□□□□□ -0.09
COL9A3-214ENST00000490398 RCC1P18754 421 aaPredicted RBP14.52□□□□□ -0.09
COL9A3-214ENST00000490398 HTR2CP28335 458 aa14.52□□□□□ -0.09
COL9A3-214ENST00000490398 PRRX1P54821 245 aa14.52□□□□□ -0.09
COL9A3-214ENST00000490398 SYT6Q5T7P8 510 aaPredicted RBP14.52□□□□□ -0.09
COL9A3-214ENST00000490398 C11orf44Q8N8P7 122 aa14.52□□□□□ -0.09
COL9A3-214ENST00000490398 RBMXL1Q96E39 390 aaKnown RBP14.52□□□□□ -0.09
COL9A3-214ENST00000490398 NPFFR1Q9GZQ6 430 aa14.52□□□□□ -0.09
COL9A3-214ENST00000490398 RANBP3Q9H6Z4 567 aaPredicted RBP14.52□□□□□ -0.09
COL9A3-214ENST00000490398 SPACA1Q9HBV2 294 aa14.52□□□□□ -0.09
COL9A3-214ENST00000490398 SERTAD4Q9NUC0 356 aa14.52□□□□□ -0.09
COL9A3-214ENST00000490398 GHRLQ9UBU3 117 aa14.52□□□□□ -0.09
COL9A3-214ENST00000490398 PRKDCP78527 4128 aaKnown RBP14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FAM90A10PA6NDY2 464 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FAM90A18PA6NE21 464 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FAM90A16PA6NEW6 464 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FAM90A20PA6NIJ5 464 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FAM90A7PA6NKC0 464 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 SH2D7A6NKC9 451 aaPredicted RBP14.51□□□□□ -0.09
COL9A3-214ENST00000490398 TMEM14DPA8MWL7 114 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FAM90A12PA8MX19 464 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FAM90A5PA8MXJ8 464 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FAM90A23PA8MXZ1 464 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 SLC31A2O15432 143 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 DENRO43583 198 aaKnown RBP14.51□□□□□ -0.09
COL9A3-214ENST00000490398 PDCD6O75340 191 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FAM90A15PP0C7V4 464 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FAM90A13PP0C7W8 464 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FAM90A14PP0C7W9 464 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FAM90A24PP0C7X0 464 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 GZMHP20718 246 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 FUT3P21217 361 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 CALRP27797 417 aaKnown RBP14.51□□□□□ -0.09
COL9A3-214ENST00000490398 LOXL3P58215 753 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 RPS27AP62979 156 aaKnown RBP14.51□□□□□ -0.09
COL9A3-214ENST00000490398 TMEM95Q3KNT9 176 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 NKAPLQ5M9Q1 402 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 Q6ZPA2 131 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 ZNF367Q7RTV3 350 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 KLHDC1Q8N7A1 406 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 OR1L1Q8NH94 360 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 SULT4A1Q9BR01 284 aa14.51□□□□□ -0.09
COL9A3-214ENST00000490398 ORC5O43913 435 aa14.5□□□□□ -0.09
COL9A3-214ENST00000490398 UBBP0CG47 229 aa14.5□□□□□ -0.09
COL9A3-214ENST00000490398 CHATP28329 748 aa14.5□□□□□ -0.09
COL9A3-214ENST00000490398 CLDN12P56749 244 aa14.5□□□□□ -0.09
COL9A3-214ENST00000490398 PLA2G7Q13093 441 aa14.5□□□□□ -0.09
COL9A3-214ENST00000490398 TRAM1Q15629 374 aa14.5□□□□□ -0.09
COL9A3-214ENST00000490398 TREML4Q6UXN2 200 aa14.5□□□□□ -0.09
COL9A3-214ENST00000490398 Q8N2B8 174 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms