RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	OR52A5	Q9H2C5	316 aa		1.64	□□□□□ -2.15
PTCD3-209	ENST00000472044	ZNF638	Q14966	1978 aa	Known RBP	1.64	□□□□□ -2.15
PTCD3-209	ENST00000472044	KMT2E	Q8IZD2	1858 aa		1.64	□□□□□ -2.15
PTCD3-209	ENST00000472044	TRPM3	Q9HCF6	1732 aa	Predicted RBP	1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	FBN1	P35555	2871 aa	Known RBP	1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	ZNF878	C9JN71	531 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	ZNF73	O43830	326 aa	Predicted RBP	1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	BRI3	O95415	125 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	LTA	P01374	205 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	OR2B6	P58173	313 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	KRTAP12-3	P60328	96 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	PAFAH1B3	Q15102	231 aa	Known RBP	1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	OR10J3	Q5JRS4	329 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	SSX7	Q7RTT5	188 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	FAM19A3	Q7Z5A8	133 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	MUC15	Q8N387	334 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	C17orf78	Q8N4C9	275 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	OR11G2	Q8NGC1	345 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	OR8K1	Q8NGG5	319 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	PHOSPHO2	Q8TCD6	241 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	PDCD6IP	Q8WUM4	868 aa	Known RBP	1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	DDIT4L	Q96D03	193 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	C20orf166-AS1	Q96NR2	134 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	OR8B2	Q96RD0	313 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	ARL6	Q9H0F7	186 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	SLC23A2	Q9UGH3	650 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	PHLDA3	Q9Y5J5	127 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	MYO16	Q9Y6X6	1858 aa		1.63	□□□□□ -2.15
PTCD3-209	ENST00000472044	SDHAF1	A6NFY7	115 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044		G3V3Q6	166 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	C3orf84	H3BNL1	204 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	DENR	O43583	198 aa	Known RBP	1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	UGT2B11	O75310	529 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	DEDD	O75618	318 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	SNAP29	O95721	258 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	GP1BA	P07359	652 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	ZNF22	P17026	224 aa	Predicted RBP	1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	ATF1	P18846	271 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	MAGEA6	P43360	314 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	MP68	P56378	58 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	KRTAP12-4	P60329	112 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	RAB31	Q13636	194 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	SYCP1	Q15431	976 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	CST6	Q15828	149 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	OR10D4P	Q8NGN7	298 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	SPPL2B	Q8TCT7	592 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	GTF2H4	Q92759	462 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	CYTH2	Q99418	400 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	OR51E2	Q9H255	320 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	FBXL15	Q9H469	300 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	CHMP5	Q9NZZ3	219 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	PTPRK	Q15262	1439 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	TRPM6	Q9BX84	2022 aa		1.62	□□□□□ -2.15
PTCD3-209	ENST00000472044	OTOF	Q9HC10	1997 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	CHD2	O14647	1828 aa	Known RBP	1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	CACNA1G	O43497	2377 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	ARGFX	A6NJG6	315 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	PHYH	O14832	338 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	RAB2A	P61019	212 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	SKP2	Q13309	424 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	RBM48	Q5RL73	367 aa	Known RBP	1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	KRTAP5-7	Q6L8G8	165 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	SCX	Q7RTU7	201 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	MTERF4	Q7Z6M4	381 aa	Known RBP	1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	TCAIM	Q8N3R3	496 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	HIST1H2BA	Q96A08	127 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	STAC	Q99469	402 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	ACBD6	Q9BR61	282 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	UGT2B28	Q9BY64	529 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	ZNF286A	Q9HBT8	521 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	KCNIP2	Q9NS61	270 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	COMMD9	Q9P000	198 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	MTCH2	Q9Y6C9	303 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	URGCP-MRPS24	S4R325	110 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	COL18A1	P39060	1754 aa		1.61	□□□□□ -2.15
PTCD3-209	ENST00000472044	MUC19	Q7Z5P9	8384 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	IGKV1-12	A0A0C4DH73	117 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	GPR171	O14626	319 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	EEF1E1	O43324	174 aa	Known RBP	1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	IGKV1D-12	P01611	117 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	LIMS3	P0CW19	117 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	LIMS4	P0CW20	117 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	OR12D1	P0DN82	309 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	COIL	P38432	576 aa	Predicted RBP	1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	TMED1	Q13445	227 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	APOF	Q13790	326 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	OR8G1	Q15617	311 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	SPIN4	Q56A73	249 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	HES3	Q5TGS1	186 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	NOXRED1	Q6NXP6	359 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	OR9I1	Q8NGQ6	314 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	CD200R1	Q8TD46	325 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	LMX1A	Q8TE12	382 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	PPWD1	Q96BP3	646 aa	Known RBP	1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	CCDC127	Q96BQ5	260 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	BCL2L14	Q9BZR8	327 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	TREM1	Q9NP99	234 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	MRPL16	Q9NX20	251 aa	Known RBP	1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	VPREB3	Q9UKI3	123 aa		1.6	□□□□□ -2.15
PTCD3-209	ENST00000472044	MMACHC	Q9Y4U1	282 aa		1.6	□□□□□ -2.15

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