RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 CCDC107Q8WV48 283 aa16.17■□□□□ 0.18
COL9A3-204ENST00000463487 ARL11Q969Q4 196 aa16.17■□□□□ 0.18
COL9A3-204ENST00000463487 SLC25A46Q96AG3 418 aa16.17■□□□□ 0.18
COL9A3-204ENST00000463487 KCTD12Q96CX2 325 aaKnown RBP16.17■□□□□ 0.18
COL9A3-204ENST00000463487 BCL7BQ9BQE9 202 aa16.17■□□□□ 0.18
COL9A3-204ENST00000463487 MGAT4AQ9UM21 535 aa16.17■□□□□ 0.18
COL9A3-204ENST00000463487 SETD2Q9BYW2 2564 aaPredicted RBP16.17■□□□□ 0.18
COL9A3-204ENST00000463487 NIPBLQ6KC79 2804 aaeCLIP16.16■□□□□ 0.18
COL9A3-204ENST00000463487 POM121CA8CG34 1229 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 ARG1P05089 322 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 SAA4P35542 130 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 TGFBR1P36897 503 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 EFNB2P52799 333 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 DLX1P56177 255 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 PRB3Q04118 309 aaPredicted RBP16.16■□□□□ 0.18
COL9A3-204ENST00000463487 C17orf58Q2M2W7 97 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 MOB1BQ7L9L4 216 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 CLVS1Q8IUQ0 354 aaPredicted RBP16.16■□□□□ 0.18
COL9A3-204ENST00000463487 BCL6BQ8N143 479 aaPredicted RBP16.16■□□□□ 0.18
COL9A3-204ENST00000463487 ZNF596Q8TC21 504 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 ARHGAP5-AS1Q96IT6 56 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 PECRQ9BY49 303 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 LINC00574Q9H8X3 128 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 C12orf4Q9NQ89 552 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 RHBDL2Q9NX52 303 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 IDI2-AS1Q9NZ38 188 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 KIAA2026Q5HYC2 2103 aa16.16■□□□□ 0.18
COL9A3-204ENST00000463487 IGHV2-26A0A0B4J1V2 119 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 A0A1W2PRD5 423 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 A0A1W2PRF3 423 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 A0A1W2PRM7 423 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 SERPINE3A8MV23 424 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 OMGP23515 440 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 NFYBP25208 207 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 SSTR5P35346 364 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 RORCP51449 518 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 TMBIM6P55061 237 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 HILS1P60008 231 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 CTF1Q16619 201 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 PIP4P2Q8N4L2 257 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 SIGLECL1Q8N7X8 197 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 OR11H6Q8NGC7 330 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 AP3S1Q92572 193 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 CREB3L1Q96BA8 519 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 KIRREL1Q96J84 757 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 ZMAT3Q9HA38 289 aaKnown RBP16.15■□□□□ 0.18
COL9A3-204ENST00000463487 SPATA2Q9UM82 520 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 TBL2Q9Y4P3 447 aaKnown RBP16.15■□□□□ 0.18
COL9A3-204ENST00000463487 SVEP1Q4LDE5 3571 aa16.15■□□□□ 0.18
COL9A3-204ENST00000463487 FOXI3A8MTJ6 420 aaPredicted RBP16.14■□□□□ 0.17
COL9A3-204ENST00000463487 NPIPB11E5RHQ5 1161 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 TOR1AO14656 332 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 CD3GP09693 182 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 CGB3P0DN86 165 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 CGB7P0DN87 165 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 HIST1H1DP16402 221 aaKnown RBP16.14■□□□□ 0.17
COL9A3-204ENST00000463487 CD34P28906 385 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 PRRX1P54821 245 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 PLA2G7Q13093 441 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 DEFB112Q30KQ8 113 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 ZNF626Q68DY1 528 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 HCP5Q6MZN7 132 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 ABHD12Q8N2K0 398 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 MRPL30Q8TCC3 161 aaKnown RBP16.14■□□□□ 0.17
COL9A3-204ENST00000463487 DYRK2Q92630 601 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 CMSS1Q9BQ75 279 aaKnown RBP16.14■□□□□ 0.17
COL9A3-204ENST00000463487 NAA50Q9GZZ1 169 aaKnown RBP16.14■□□□□ 0.17
COL9A3-204ENST00000463487 DCSTAMPQ9H295 470 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 MBNL3Q9NUK0 354 aaKnown RBP16.14■□□□□ 0.17
COL9A3-204ENST00000463487 AK3Q9UIJ7 227 aa16.14■□□□□ 0.17
COL9A3-204ENST00000463487 A0A087X0M5 115 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 A0A0A6YYH2 397 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 TRAV39A0A0B4J263 110 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 A0A0U1RQK1 487 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 A0A1B0GX30 115 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 BTBD17A6NE02 478 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 A6NJ64 397 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 RAB27BO00194 218 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 SDCBPO00560 298 aaPredicted RBP16.13■□□□□ 0.17
COL9A3-204ENST00000463487 TMEM50BP56557 158 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 BAMBIQ13145 260 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 MINOS1Q5TGZ0 78 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 PRIMA1Q86XR5 153 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 PRR18Q8N4B5 295 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 OR52M1Q8NGK5 317 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 RFESDQ8TAC1 157 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 SETD6Q8TBK2 473 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 ACOT12Q8WYK0 555 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 DIABLOQ9NR28 239 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 MINOS1-NBL1R4GNA1 71 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 ZFHX3Q15911 3703 aa16.13■□□□□ 0.17
COL9A3-204ENST00000463487 ANK3Q12955 4377 aaKnown RBP16.13■□□□□ 0.17
COL9A3-204ENST00000463487 TRBV6-6A0A0A6YYG2 114 aa16.12■□□□□ 0.17
COL9A3-204ENST00000463487 TRIM77I1YAP6 450 aa16.12■□□□□ 0.17
COL9A3-204ENST00000463487 MMP23AO75900 390 aa16.12■□□□□ 0.17
COL9A3-204ENST00000463487 NAPSAO96009 420 aa16.12■□□□□ 0.17
COL9A3-204ENST00000463487 SOX6P35712 828 aa16.12■□□□□ 0.17
COL9A3-204ENST00000463487 TALDO1P37837 337 aa16.12■□□□□ 0.17
COL9A3-204ENST00000463487 CEACAM3P40198 252 aa16.12■□□□□ 0.17
COL9A3-204ENST00000463487 ARFRP1Q13795 201 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms