RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 LHFPL4Q7Z7J7 247 aa15.59■□□□□ 0.09
CLN3-260ENST00000637578 TBL2Q9Y4P3 447 aaKnown RBP15.59■□□□□ 0.09
CLN3-260ENST00000637578 A0A1W2PP11 408 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 SMIM30A4D0T7 59 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 SLC33A1O00400 549 aaPredicted RBP15.58■□□□□ 0.09
CLN3-260ENST00000637578 PDCD5O14737 125 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 SLC22A1O15245 554 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 CLPXO76031 633 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 SERPINA2P20848 420 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 PROK1P58294 105 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 LDLRAD2Q5SZI1 272 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 GPR141Q7Z602 305 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 NR2C2APQ86WQ0 139 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 DYNAPQ8N1N2 210 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 OR51T1Q8NGJ9 327 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 CITED1Q99966 193 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 PLGRKTQ9HBL7 147 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 SCOCQ9UIL1 159 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 RNF114Q9Y508 228 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 SESN1Q9Y6P5 492 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 V9GY05 133 aa15.58■□□□□ 0.09
CLN3-260ENST00000637578 SLC17A2O00624 439 aa15.58■□□□□ 0.08
CLN3-260ENST00000637578 RAB3BP20337 219 aa15.58■□□□□ 0.08
CLN3-260ENST00000637578 PAX6P26367 422 aa15.58■□□□□ 0.08
CLN3-260ENST00000637578 HTR2CP28335 458 aa15.58■□□□□ 0.08
CLN3-260ENST00000637578 SDC2P34741 201 aa15.58■□□□□ 0.08
CLN3-260ENST00000637578 TGFBR1P36897 503 aa15.58■□□□□ 0.08
CLN3-260ENST00000637578 RPL5P46777 297 aaKnown RBP15.58■□□□□ 0.08
CLN3-260ENST00000637578 LSM3P62310 102 aaKnown RBP15.58■□□□□ 0.08
CLN3-260ENST00000637578 OR6M1Q8NGM8 313 aa15.58■□□□□ 0.08
CLN3-260ENST00000637578 MALSU1Q96EH3 234 aa15.58■□□□□ 0.08
CLN3-260ENST00000637578 NAA50Q9GZZ1 169 aaKnown RBP15.58■□□□□ 0.08
CLN3-260ENST00000637578 MGAM2Q2M2H8 2515 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 FUOMA2VDF0 154 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 DEGS1O15121 323 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 ZNF780AO75290 641 aaPredicted RBP15.57■□□□□ 0.08
CLN3-260ENST00000637578 CSTBP04080 98 aaKnown RBP15.57■□□□□ 0.08
CLN3-260ENST00000637578 ARG1P05089 322 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 ZNF44P15621 663 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 GLIPR1P48060 266 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 PSMD7P51665 324 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 KRTAP10-3P60369 221 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 AESQ08117 197 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 SRSF4Q08170 494 aaKnown RBP15.57■□□□□ 0.08
CLN3-260ENST00000637578 PIGYQ3MUY2 71 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 SLC16A12Q6ZSM3 486 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 COQ2Q96H96 371 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 TMEM133Q9H2Q1 129 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 PPA2Q9H2U2 334 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 TAS2R3Q9NYW6 316 aa15.57■□□□□ 0.08
CLN3-260ENST00000637578 MMP23AO75900 390 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 CLEC2LP0C7M8 214 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 CLDN12P56749 244 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 SCN1BQ07699 218 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 GPR176Q14439 515 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 P2RY14Q15391 338 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 RAB11BQ15907 218 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 HES5Q5TA89 166 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 GPR107Q5VW38 600 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 TPRA1Q86W33 373 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 OSR2Q8N2R0 312 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 TMEM104Q8NE00 496 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 KCNK15Q9H427 330 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 PKD1L1Q8TDX9 2849 aa15.56■□□□□ 0.08
CLN3-260ENST00000637578 TRGV10A0A0A0MS01 117 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 IGHV2-26A0A0B4J1V2 119 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 IFITM5A6NNB3 132 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 GTF2F2P13984 249 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 MXD1Q05195 221 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 IL13RA2Q14627 380 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 MINOS1Q5TGZ0 78 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 SLC35E4Q6ICL7 350 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 HEPN1Q6WQI6 88 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 LIAT1Q6ZQX7 453 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 ANKRD13BQ86YJ7 626 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 FAM46BQ96A09 425 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 NCOR1P1Q9H4R4 102 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 BANF2Q9H503 90 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 PCDHB16Q9NRJ7 776 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 GHRLQ9UBU3 117 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 FBLN5Q9UBX5 448 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 MINOS1-NBL1R4GNA1 71 aa15.55■□□□□ 0.08
CLN3-260ENST00000637578 TRAV24A0A0B4J272 114 aa15.54■□□□□ 0.08
CLN3-260ENST00000637578 ODAMA1E959 279 aa15.54■□□□□ 0.08
CLN3-260ENST00000637578 CRTAPO75718 401 aaPredicted RBP15.54■□□□□ 0.08
CLN3-260ENST00000637578 GABARAPO95166 117 aa15.54■□□□□ 0.08
CLN3-260ENST00000637578 BPNT1O95861 308 aa15.54■□□□□ 0.08
CLN3-260ENST00000637578 UBBP0CG47 229 aa15.54■□□□□ 0.08
CLN3-260ENST00000637578 VSIG8P0DPA2 414 aa15.54■□□□□ 0.08
CLN3-260ENST00000637578 RBM11P57052 281 aaKnown RBP15.54■□□□□ 0.08
CLN3-260ENST00000637578 NCS1P62166 190 aa15.54■□□□□ 0.08
CLN3-260ENST00000637578 PAX5Q02548 391 aa15.54■□□□□ 0.08
CLN3-260ENST00000637578 NHLRC3Q5JS37 347 aa15.54■□□□□ 0.08
CLN3-260ENST00000637578 OR10K2Q6IF99 312 aa15.54■□□□□ 0.08
CLN3-260ENST00000637578 GAL3ST2Q9H3Q3 398 aa15.54■□□□□ 0.08
CLN3-260ENST00000637578 ST3GAL6Q9Y274 331 aa15.54■□□□□ 0.08
CLN3-260ENST00000637578 NOTOA8MTQ0 251 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 AIPO00170 330 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 CGB3P0DN86 165 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 CGB7P0DN87 165 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms