RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CA5BP1Q8WTZ4 195 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 HPSE2Q8WWQ2 592 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 TOMM40LQ969M1 308 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 RHOFQ9HBH0 211 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 SPACA1Q9HBV2 294 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 PCDHB10Q9UN67 800 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 MPC1Q9Y5U8 109 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 PDZD2O15018 2839 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 CTXN2P0C2S0 81 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 HKR1P10072 659 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 PRSS12P56730 875 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 RND3P61587 244 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 OR1K1Q8NGR3 316 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 MRPL24Q96A35 216 aaKnown RBP12.64□□□□□ -0.39
USP4-203ENST00000415188 MARS2Q96GW9 593 aaKnown RBP12.64□□□□□ -0.39
USP4-203ENST00000415188 C18orf12Q96KH6 178 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 LURAP1Q96LR2 239 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 LIME1Q9H400 295 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 SLC2A9Q9NRM0 540 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 COQ3Q9NZJ6 369 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 ZNF581Q9P0T4 197 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 DNAJC13O75165 2243 aa12.64□□□□□ -0.39
USP4-203ENST00000415188 TRBV6-6A0A0A6YYG2 114 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 KIR2DS1A0A191URI9 304 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 ANKRD30BLA7E2S9 258 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 CD300LBA8K4G0 201 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 E5RGE8 158 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 TRAPPC2LH3BP13 241 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 K7EPK0 472 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 DIRAS3O95661 229 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 NAPSAO96009 420 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 BCL3P20749 454 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 CCNOP22674 350 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 RPL12P30050 165 aaKnown RBP12.63□□□□□ -0.39
USP4-203ENST00000415188 KIR2DS4P43632 304 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 IL13RA2Q14627 380 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 KIR2DS1Q14954 304 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 C9orf135Q5VTT2 229 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 NUFIP2Q7Z417 695 aaKnown RBP12.63□□□□□ -0.39
USP4-203ENST00000415188 FAM71E2Q8N5Q1 922 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 OR1S2Q8NGQ3 325 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 DYRK2Q92630 601 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 WDYHV1Q96HA8 205 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 PKIBQ9C010 78 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 Q9N2K0 584 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 ZC4H2Q9NQZ6 224 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 MMP26Q9NRE1 261 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 GLRX2Q9NS18 164 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 NSG2Q9Y328 171 aa12.63□□□□□ -0.39
USP4-203ENST00000415188 AKAP9Q99996 3911 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 OTOGQ6ZRI0 2925 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 TRGV5A0A0B4J1U4 118 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 PIGBOS1A0A0B4J2F0 54 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 NKX2-6A6NCS4 301 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 FAM90A27PA6NNH2 459 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 ZNF732B4DXR9 585 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 JTBO76095 146 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 PPYP01298 95 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 IGHG3P01860 377 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 OR5AC1P0C628 307 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 AADACP22760 399 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 DUSP1P28562 367 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 HAAOP46952 286 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 NPBWR2P48146 333 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 GPM6AP51674 278 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 FXYD4P59646 89 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 KRTAP10-9P60411 292 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 DAZAP2Q15038 168 aaPredicted RBP12.62□□□□□ -0.39
USP4-203ENST00000415188 GPR157Q5UAW9 335 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 FBXW9Q5XUX1 488 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 MEX3BQ6ZN04 569 aaKnown RBP12.62□□□□□ -0.39
USP4-203ENST00000415188 ZNF573Q86YE8 665 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 BHLHE23Q8NDY6 225 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 OR5P3Q8WZ94 311 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 RND1Q92730 232 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 BCL2L2Q92843 193 aaPredicted RBP12.62□□□□□ -0.39
USP4-203ENST00000415188 SLAMF9Q96A28 289 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 FGF23Q9GZV9 251 aaPredicted RBP12.62□□□□□ -0.39
USP4-203ENST00000415188 LPAR3Q9UBY5 353 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 TMED3Q9Y3Q3 217 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 FREM1Q5H8C1 2179 aa12.62□□□□□ -0.39
USP4-203ENST00000415188 LOC105371267A0A1B0GV96 52 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 DUXBA0A1W2PPF3 345 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 ZNF503-AS2A6NEH8 195 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 SLC22A20A6NK97 555 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 TK1P04183 234 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 FAM157CP0CG43 387 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 FOXG1P55316 489 aaPredicted RBP12.61□□□□□ -0.39
USP4-203ENST00000415188 GNG3P63215 75 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 BLOC1S1P78537 153 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 SPERTQ8NA61 448 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 BPIFCQ8NFQ6 507 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 TMED6Q8WW62 240 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 MSI2Q96DH6 328 aaKnown RBP12.61□□□□□ -0.39
USP4-203ENST00000415188 ABHD14BQ96IU4 210 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 SPOCK3Q9BQ16 436 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 IFT22Q9H7X7 185 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 POLQO75417 2590 aa12.61□□□□□ -0.39
USP4-203ENST00000415188 KCNAB3O43448 404 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 CHRNB4P30926 498 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms