RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ZNRF1Q8ND25 227 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 LY6G5BQ8NDX9 201 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 OR8B3Q8NGG8 313 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 OR5H6Q8NGV6 325 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 AP3S1Q92572 193 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 FAM46BQ96A09 425 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 OR8B2Q96RD0 313 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 CCL13Q99616 98 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 NICN1Q9BSH3 213 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 URM1Q9BTM9 101 aaKnown RBP7.58□□□□□ -1.2
VPS53-203ENST00000401468 ELL3Q9HB65 397 aaPredicted RBP7.58□□□□□ -1.2
VPS53-203ENST00000401468 SPACA1Q9HBV2 294 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 MMP26Q9NRE1 261 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 DUX4Q9UBX2 424 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 GLS2Q9UI32 602 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 DEGS1O15121 323 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 NDUFB3O43676 98 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 PDCD6O75340 191 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 SCGNO76038 276 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 ECDO95905 644 aaPredicted RBP7.57□□□□□ -1.2
VPS53-203ENST00000401468 TFF1P04155 84 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 FUT3P21217 361 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 DUSP1P28562 367 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 PITPNBP48739 271 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 TMEM50BP56557 158 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 GMFBP60983 142 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 IKZF1Q13422 519 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 TAF9Q16594 264 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 PLAC9Q5JTB6 97 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 UBE2NLQ5JXB2 153 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 DCAF12L2Q5VW00 463 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 BCL6BQ8N143 479 aaPredicted RBP7.57□□□□□ -1.2
VPS53-203ENST00000401468 SUMF2Q8NBJ7 301 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 OR4S1Q8NGB4 309 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 OR5D13Q8NGL4 314 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 RAB40AQ8WXH6 277 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 ST8SIA4Q92187 359 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 WDR89Q96FK6 387 aaPredicted RBP7.57□□□□□ -1.2
VPS53-203ENST00000401468 SSBP3Q9BWW4 388 aaPredicted RBP7.57□□□□□ -1.2
VPS53-203ENST00000401468 ESM1Q9NQ30 184 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 RHBDL2Q9NX52 303 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 SLC25A10Q9UBX3 287 aaPredicted RBP7.57□□□□□ -1.2
VPS53-203ENST00000401468 CLN8Q9UBY8 286 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 OR14J1Q9UGF5 321 aa7.57□□□□□ -1.2
VPS53-203ENST00000401468 TRBV23-1A0A0A0MS06 115 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 METTL21EPA6NDL7 271 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 MFNGO00587 321 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 MGST3O14880 152 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 SOCS1O15524 211 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 CA11O75493 328 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 FOXH1O75593 365 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 OR7C1O76099 320 aaPredicted RBP7.56□□□□□ -1.2
VPS53-203ENST00000401468 TPPPO94811 219 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 APOA1P02647 267 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 SOX6P35712 828 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 MNDAP41218 407 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 GABRA2P47869 451 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 GNB2P62879 340 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 ACTG1P63261 375 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 ID3Q02535 119 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 MOGAT2Q3SYC2 334 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 ESCO2Q56NI9 601 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 LRRC10Q5BKY1 277 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 RSBN1Q5VWQ0 802 aaPredicted RBP7.56□□□□□ -1.2
VPS53-203ENST00000401468 RAB12Q6IQ22 244 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 FGFRL1Q8N441 504 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 OR56B1Q8NGI3 324 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 OR10R2Q8NGX6 335 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 COQ2Q96H96 371 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 WDFY2Q96P53 400 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 FANCD2OSQ96PS1 177 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 DCTN5Q9BTE1 182 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 DPCDQ9BVM2 203 aaPredicted RBP7.56□□□□□ -1.2
VPS53-203ENST00000401468 MIXL1Q9H2W2 232 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 LINC00574Q9H8X3 128 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 RPUSD1Q9UJJ7 312 aaKnown RBP7.56□□□□□ -1.2
VPS53-203ENST00000401468 PCDHB10Q9UN67 800 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 KCNK7Q9Y2U2 307 aa7.56□□□□□ -1.2
VPS53-203ENST00000401468 TRBV6-6A0A0A6YYG2 114 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 TRAV20A0A0B4J274 112 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 MDFIC2A0A1B0GVS7 189 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 CCDC160A6NGH7 325 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 C22orf46C9J442 243 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 SIRPB1O00241 398 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 KCNAB3O43448 404 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 XRCC3O43542 346 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 NAPSAO96009 420 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 MELTFP08582 738 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 GSTP1P09211 210 aaKnown RBP7.55□□□□□ -1.2
VPS53-203ENST00000401468 CGB3P0DN86 165 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 CGB7P0DN87 165 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 ZNF44P15621 663 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 GATA3P23771 443 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 GABRR1P24046 479 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 BLVRBP30043 206 aaPredicted RBP7.55□□□□□ -1.2
VPS53-203ENST00000401468 SNU13P55769 128 aaKnown RBP7.55□□□□□ -1.2
VPS53-203ENST00000401468 MEF2CQ06413 473 aaPredicted RBP7.55□□□□□ -1.2
VPS53-203ENST00000401468 RBM39Q14498 530 aaKnown RBP7.55□□□□□ -1.2
VPS53-203ENST00000401468 PDCD1Q15116 288 aa7.55□□□□□ -1.2
VPS53-203ENST00000401468 ZNF260Q3ZCT1 412 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms