RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SLC22A25Q6T423 547 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 FGFBP3Q8TAT2 258 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 TMED6Q8WW62 240 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 HIST1H2BAQ96A08 127 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 HIST1H2AAQ96QV6 131 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 SULT4A1Q9BR01 284 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 HES7Q9BYE0 225 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 LINC00470Q9BZP3 86 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 AP4M1O00189 453 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 TAAR5O14804 337 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 PHOX2AO14813 284 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 CDKN1BP46527 198 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 PIGPP57054 158 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 BLOC1S1P78537 153 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 UQCC3Q6UW78 93 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 ASCL4Q6XD76 172 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 TMEM200AQ86VY9 491 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 SLC30A7Q8NEW0 376 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 SLC24A4Q8NFF2 622 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 AQP10Q96PS8 301 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 PRDM14Q9GZV8 571 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 SLC7A10Q9NS82 523 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 IL36GQ9NZH8 169 aa8.33□□□□□ -1.08
COL6A3-204ENST00000392003 A0A096LPE4 126 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 A0A1W2PPZ6 126 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 TMEM218A2RU14 115 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 A8MWP6 167 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 KLRC4-KLRK1H3BQV0 150 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 IFNA10P01566 189 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 CD79AP11912 226 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 AGAP20933 346 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 FUT3P21217 361 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 OR8B8Q15620 311 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 ATP1A1-AS1Q5TC04 95 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 SLC25A26Q70HW3 274 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 CCDC71LQ8N9Z2 235 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 OR10AD1Q8NGE0 317 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 OR1S2Q8NGQ3 325 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 RRNAD1Q96FB5 475 aaKnown RBP8.32□□□□□ -1.08
COL6A3-204ENST00000392003 PACRGQ96M98 296 aaPredicted RBP8.32□□□□□ -1.08
COL6A3-204ENST00000392003 SIGLEC12Q96PQ1 595 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 CHD3Q12873 2000 aaKnown RBP8.32□□□□□ -1.08
COL6A3-204ENST00000392003 IGKV3D-15A0A087WSY6 115 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 A0A1W2PNU3 283 aaPredicted RBP8.32□□□□□ -1.08
COL6A3-204ENST00000392003 CRYM-AS1A6NIL9 109 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 FTH1P19P0C7X4 201 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 FGF8P55075 233 aaPredicted RBP8.32□□□□□ -1.08
COL6A3-204ENST00000392003 KRTAP27-1Q3LI81 207 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 BRICD5Q6PL45 260 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 VASH2Q86V25 355 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 TNFRSF14Q92956 283 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 APH1AQ96BI3 265 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 CNTNAP3BQ96NU0 1288 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 C1QTNF5Q9BXJ0 243 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 CNTNAP3Q9BZ76 1288 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 GAL3ST2Q9H3Q3 398 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 ZNF703Q9H7S9 590 aaPredicted RBP8.32□□□□□ -1.08
COL6A3-204ENST00000392003 KLF13Q9Y2Y9 288 aaPredicted RBP8.32□□□□□ -1.08
COL6A3-204ENST00000392003 LSM5Q9Y4Y9 91 aaKnown RBP8.32□□□□□ -1.08
COL6A3-204ENST00000392003 DNAJC13O75165 2243 aa8.32□□□□□ -1.08
COL6A3-204ENST00000392003 A0A1W2PN81 502 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 K7EPK0 472 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 MMP7P09237 267 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-204ENST00000392003 LYL1P12980 280 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 FCGR2CP31995 323 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 CHRNA7P36544 502 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 CCL11P51671 97 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 GFI1BQ5VTD9 330 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 NCR3LG1Q68D85 454 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 TUSC5Q8IXB3 177 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 FAM71E2Q8N5Q1 922 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 ZNF611Q8N823 705 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 RTN4IP1Q8WWV3 396 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-204ENST00000392003 BARX1Q9HBU1 254 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-204ENST00000392003 PLSCR2Q9NRY7 297 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 RP1L1Q8IWN7 2480 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-204ENST00000392003 C5orf49A4QMS7 147 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 MSGN1A6NI15 193 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 ZNF705EA8MWA4 302 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-204ENST00000392003 AHRRA9YTQ3 701 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 NEURL1O76050 574 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 MAGEA5P43359 124 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 LHX2P50458 406 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 TDGF1P3P51864 188 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 RBM11P57052 281 aaKnown RBP8.31□□□□□ -1.08
COL6A3-204ENST00000392003 GGNBP1Q5YKI7 109 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 LRP11Q86VZ4 500 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 SELENOHQ8IZQ5 122 aaKnown RBP8.31□□□□□ -1.08
COL6A3-204ENST00000392003 NDUFAF3Q9BU61 184 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 NAA60Q9H7X0 242 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 RNF122Q9H9V4 155 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 IGKV1-12A0A0C4DH73 117 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 IGKV1D-12P01611 117 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 HLA-HP01893 362 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 RPL12P30050 165 aaKnown RBP8.31□□□□□ -1.08
COL6A3-204ENST00000392003 ARR3P36575 388 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 PDCD1Q15116 288 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 PHLDA2Q53GA4 152 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 FBXW9Q5XUX1 488 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 TMEM211Q6ICI0 200 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms