RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 CA10Q9NS85 328 aa16.15■□□□□ 0.18
SHANK1-202ENST00000359082 INSIG2Q9Y5U4 225 aa16.15■□□□□ 0.18
SHANK1-202ENST00000359082 A0A1W2PPE3 182 aa16.14■□□□□ 0.18
SHANK1-202ENST00000359082 RAG2P55895 527 aa16.14■□□□□ 0.18
SHANK1-202ENST00000359082 HOXA4Q00056 320 aaPredicted RBP16.14■□□□□ 0.18
SHANK1-202ENST00000359082 EAF1Q96JC9 268 aaPredicted RBP16.14■□□□□ 0.18
SHANK1-202ENST00000359082 TMEM204Q9BSN7 226 aa16.14■□□□□ 0.18
SHANK1-202ENST00000359082 WBP1LQ9NX94 342 aa16.14■□□□□ 0.18
SHANK1-202ENST00000359082 AP4M1O00189 453 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 IGF2P01344 180 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 IL9P15248 144 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 MYOZ3Q8TDC0 251 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 FAM222BQ8WU58 562 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 M0R143 59 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 MRPL24Q96A35 216 aaKnown RBP16.14■□□□□ 0.17
SHANK1-202ENST00000359082 FLRT3Q9NZU0 649 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 FUT9Q9Y231 359 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 PAGE4O60829 102 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 CLDN18P56856 261 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 HSD17B13Q7Z5P4 300 aaPredicted RBP16.14■□□□□ 0.17
SHANK1-202ENST00000359082 PRNTQ86SH4 94 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 LSMEM1Q8N8F7 131 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 MRGPRFQ96AM1 343 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 TFF2Q03403 129 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 OR5A2Q8NGI9 324 aa16.14■□□□□ 0.17
SHANK1-202ENST00000359082 REG1BP48304 166 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 DLX1P56177 255 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 C16orf82Q7Z2V1 217 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 HMSDA8MTL9 139 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 HRKO00198 91 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 PSG2P11465 335 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 TMEM255AQ5JRV8 349 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 DMKNQ6E0U4 476 aaPredicted RBP16.13■□□□□ 0.17
SHANK1-202ENST00000359082 HARBI1Q96MB7 349 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 CCL4P13236 92 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 RHBDD2Q6NTF9 364 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 SNX22Q96L94 193 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 ELOA3CA0A087WX78 387 aaPredicted RBP16.13■□□□□ 0.17
SHANK1-202ENST00000359082 TCRBV16S1A1N1A0A5B0 115 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 MFSD2BA6NFX1 497 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 SLC25A40Q8TBP6 338 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 ADIPOR1Q96A54 375 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 PACRGQ96M98 296 aaPredicted RBP16.13■□□□□ 0.17
SHANK1-202ENST00000359082 AESQ08117 197 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 DPPA3Q6W0C5 159 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 SOSTQ9BQB4 213 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 TNRC6CQ9HCJ0 1690 aaKnown RBP16.13■□□□□ 0.17
SHANK1-202ENST00000359082 IER3P46695 156 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 EWSR1Q01844 656 aaKnown RBP eCLIP16.13■□□□□ 0.17
SHANK1-202ENST00000359082 ATG4DQ86TL0 474 aaPredicted RBP16.13■□□□□ 0.17
SHANK1-202ENST00000359082 GPR35Q9HC97 309 aa16.13■□□□□ 0.17
SHANK1-202ENST00000359082 NKX2-6A6NCS4 301 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 DEDDO75618 318 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 GCSHP23434 173 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 DRD3P35462 400 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 AURKAIP1Q9NWT8 199 aaPredicted RBP16.12■□□□□ 0.17
SHANK1-202ENST00000359082 NTMQ9P121 344 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 NEU3Q9UQ49 428 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 SMPD2O60906 423 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 C19orf57Q0VDD7 668 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 OR8I2Q8N0Y5 310 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 OR4D11Q8NGI4 311 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 COX14Q96I36 57 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 VAX2Q9UIW0 290 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 A0A087X0M5 115 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 A0A1B0GX30 115 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 COL10A1Q03692 680 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 SNRNP40Q96DI7 357 aaKnown RBP16.12■□□□□ 0.17
SHANK1-202ENST00000359082 P2RX4Q99571 388 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 SF3B5Q9BWJ5 86 aaKnown RBP16.12■□□□□ 0.17
SHANK1-202ENST00000359082 ANGPTL4Q9BY76 406 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 OR51B2Q9Y5P1 312 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 AKAP11Q9UKA4 1901 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 MUC15Q8N387 334 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 HSF4Q9ULV5 492 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 COL18A1P39060 1754 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 ARID1BQ8NFD5 2236 aaPredicted RBP16.12■□□□□ 0.17
SHANK1-202ENST00000359082 PPYP01298 95 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 CCL3P10147 92 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 LRRC75AQ8NAA5 344 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 NUBPLQ8TB37 319 aa16.12■□□□□ 0.17
SHANK1-202ENST00000359082 NAAAQ02083 359 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 PNRC1Q12796 327 aaPredicted RBP16.11■□□□□ 0.17
SHANK1-202ENST00000359082 TWIST1Q15672 202 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 UCN2Q96RP3 112 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 HSPB8Q9UJY1 196 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 MYH14Q7Z406 1995 aaKnown RBP16.11■□□□□ 0.17
SHANK1-202ENST00000359082 CTDSPLO15194 276 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 LIMS2Q7Z4I7 341 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 GBGT1Q8N5D6 347 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 MARVELD1Q9BSK0 173 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 PRNDQ9UKY0 176 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 A0A1W2PQD3 144 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 HIST1H1EP10412 219 aaKnown RBP16.11■□□□□ 0.17
SHANK1-202ENST00000359082 SUCLG1P53597 346 aaKnown RBP16.11■□□□□ 0.17
SHANK1-202ENST00000359082 C1RLQ9NZP8 487 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 OGG1O15527 345 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 ID1P41134 155 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 TMEM50BP56557 158 aa16.11■□□□□ 0.17
SHANK1-202ENST00000359082 FAHD2BQ6P2I3 314 aaPredicted RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms