RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ZNF14P17017 642 aaPredicted RBP9.06□□□□□ -0.96
CUX1-221ENST00000622516 HERV-K104P61576 105 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 TCF15Q12870 199 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 HERPUD1Q15011 391 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 TBC1D28Q2M2D7 210 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 TMEM211Q6ICI0 200 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 FAM214BQ7L5A3 538 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 WDR86Q86TI4 376 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 SUMF2Q8NBJ7 301 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 GLYATL2Q8WU03 294 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 TP53RKQ96S44 253 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 CYTL1Q9NRR1 136 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 DECR2Q9NUI1 292 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 TAS2R3Q9NYW6 316 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 KCNIP3Q9Y2W7 256 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 PTPRBP23467 1997 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 PLCE1Q9P212 2302 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 TUBAL3A6NHL2 446 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 CDIPTO14735 213 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 GRPP07492 148 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 ZNF44P15621 663 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 GNRHRP30968 328 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 GLP1RP43220 463 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 IL15RAQ13261 267 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 TMEM187Q14656 261 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 PAN3Q58A45 887 aaKnown RBP9.06□□□□□ -0.96
CUX1-221ENST00000622516 OR52M1Q8NGK5 317 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 IL1F10Q8WWZ1 152 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 NARS2Q96I59 477 aaKnown RBP9.06□□□□□ -0.96
CUX1-221ENST00000622516 ASF1BQ9NVP2 202 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 TRBV6-7A0A0A0MS04 114 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 TRAV20A0A0B4J274 112 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 IGKV1D-13A0A0B4J2D9 117 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 IGKV1-6A0A0C4DH72 117 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 RAB19A4D1S5 217 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 HSD17B6O14756 317 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 TM4SF5O14894 197 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 NUPL2O15504 423 aaKnown RBP9.06□□□□□ -0.96
CUX1-221ENST00000622516 NXPH3O95157 252 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 TFF1P04155 84 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 IGKV1-13P0DP09 117 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 NUP62P37198 522 aaPredicted RBP9.06□□□□□ -0.96
CUX1-221ENST00000622516 BTN1A1Q13410 526 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 RPL7L1Q6DKI1 246 aaKnown RBP9.06□□□□□ -0.96
CUX1-221ENST00000622516 BVESQ8NE79 360 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 OR1S2Q8NGQ3 325 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 OR1J1Q8NGS3 322 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 SLC25A40Q8TBP6 338 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 NANOS1Q8WY41 292 aaKnown RBP9.06□□□□□ -0.96
CUX1-221ENST00000622516 MOB3AQ96BX8 217 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 CLCF1Q9UBD9 225 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 TRAV24A0A0B4J272 114 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 SIRPB1O00241 398 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 SMPD2O60906 423 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 IFNA21P01568 189 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 CD82P27701 267 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 KIR2DL2P43627 348 aaPredicted RBP9.05□□□□□ -0.96
CUX1-221ENST00000622516 CEBPDP49716 269 aaPredicted RBP9.05□□□□□ -0.96
CUX1-221ENST00000622516 ASCL1P50553 236 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 PPP1CBP62140 327 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 GNG3P63215 75 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 STX12Q86Y82 276 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 FAM58AQ8N1B3 248 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 BSCL2Q96G97 398 aaPredicted RBP9.05□□□□□ -0.96
CUX1-221ENST00000622516 PARP12Q9H0J9 701 aaKnown RBP9.05□□□□□ -0.96
CUX1-221ENST00000622516 SLC25A32Q9H2D1 315 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 CDH20Q9HBT6 801 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 BARX1Q9HBU1 254 aaPredicted RBP9.05□□□□□ -0.96
CUX1-221ENST00000622516 GP6Q9HCN6 339 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 Q9N2K0 584 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 ZZEF1O43149 2961 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 A0A1B0GWJ7 208 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 CLN5O75503 358 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 MPV17P39210 176 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 PLEKHN1Q494U1 663 aaPredicted RBP9.05□□□□□ -0.96
CUX1-221ENST00000622516 ZNF818PQ6ZRF7 136 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 BAP18Q8IXM2 172 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 GAPTQ8N292 157 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 WNT2BQ93097 391 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 CNTNAP3BQ96NU0 1288 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 CNTNAP3Q9BZ76 1288 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 PCDHB10Q9UN67 800 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 LHX6Q9UPM6 363 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 NBASA2RRP1 2371 aa9.05□□□□□ -0.96
CUX1-221ENST00000622516 ZGRF1Q86YA3 2104 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 TRAV17A0A0B4J275 112 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 A8MXK9 166 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 K7EM74 188 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 FBXO24O75426 580 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 NAPSAO96009 420 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 APOC3P02656 99 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 MBPP02686 304 aaPredicted RBP9.04□□□□□ -0.96
CUX1-221ENST00000622516 TK1P04183 234 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 FGF2P09038 288 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 HKR1P10072 659 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 TGFBR3Q03167 851 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 PSG7Q13046 419 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 GABRA6Q16445 453 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 TMEM268Q5VZI3 342 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 ZNF826PQ6ZT77 177 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms