RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ATXN7L3Q14CW9 347 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-209ENST00000532725 TAF9Q16594 264 aa16.2■□□□□ 0.18
CPSF1-209ENST00000532725 MPV17LQ2QL34 196 aa16.2■□□□□ 0.18
CPSF1-209ENST00000532725 SUMF2Q8NBJ7 301 aa16.2■□□□□ 0.18
CPSF1-209ENST00000532725 FCGR1BQ92637 280 aa16.2■□□□□ 0.18
CPSF1-209ENST00000532725 AJUBAQ96IF1 538 aa16.2■□□□□ 0.18
CPSF1-209ENST00000532725 DUX5Q96PT3 197 aa16.2■□□□□ 0.18
CPSF1-209ENST00000532725 DPCDQ9BVM2 203 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-209ENST00000532725 BANF2Q9H503 90 aa16.2■□□□□ 0.18
CPSF1-209ENST00000532725 TRDV1A0A1B0GX56 115 aa16.19■□□□□ 0.18
CPSF1-209ENST00000532725 CCRL2O00421 344 aa16.19■□□□□ 0.18
CPSF1-209ENST00000532725 HSPB6O14558 160 aa16.19■□□□□ 0.18
CPSF1-209ENST00000532725 IGHV1-8P0DP01 117 aa16.19■□□□□ 0.18
CPSF1-209ENST00000532725 CALRP27797 417 aaKnown RBP16.19■□□□□ 0.18
CPSF1-209ENST00000532725 KCNJ3P48549 501 aa16.19■□□□□ 0.18
CPSF1-209ENST00000532725 ZNF782Q6ZMW2 699 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-209ENST00000532725 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-209ENST00000532725 SLC25A28Q96A46 364 aa16.19■□□□□ 0.18
CPSF1-209ENST00000532725 BARHL1Q9BZE3 327 aa16.19■□□□□ 0.18
CPSF1-209ENST00000532725 ING3Q9NXR8 418 aa16.19■□□□□ 0.18
CPSF1-209ENST00000532725 TAS2R3Q9NYW6 316 aa16.19■□□□□ 0.18
CPSF1-209ENST00000532725 AK6Q9Y3D8 172 aaKnown RBP16.19■□□□□ 0.18
CPSF1-209ENST00000532725 TRGV10A0A0A0MS01 117 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 MEIOCA2RUB1 952 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 SLC22A1O15245 554 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 HOXA3O43365 443 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-209ENST00000532725 MELTFP08582 738 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 UBBP0CG47 229 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 CGB3P0DN86 165 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 CGB7P0DN87 165 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 MGMTP16455 207 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 GALP22466 123 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 PSMB9P28065 219 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 SAA4P35542 130 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 MIDNQ504T8 468 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 RSBN1Q5VWQ0 802 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-209ENST00000532725 BRICD5Q6PL45 260 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 TRAPPC6BQ86SZ2 158 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 PLPPR1Q8TBJ4 325 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 SELENOIQ9C0D9 397 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 FAM96BQ9Y3D0 163 aa16.18■□□□□ 0.18
CPSF1-209ENST00000532725 CRTAPO75718 401 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-209ENST00000532725 MMP23AO75900 390 aa16.17■□□□□ 0.18
CPSF1-209ENST00000532725 VSIG8P0DPA2 414 aa16.17■□□□□ 0.18
CPSF1-209ENST00000532725 HTR2CP28335 458 aa16.17■□□□□ 0.18
CPSF1-209ENST00000532725 ATAD3CQ5T2N8 411 aa16.17■□□□□ 0.18
CPSF1-209ENST00000532725 SYT6Q5T7P8 510 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-209ENST00000532725 OR11H6Q8NGC7 330 aa16.17■□□□□ 0.18
CPSF1-209ENST00000532725 SPATA3Q8NHX4 192 aa16.17■□□□□ 0.18
CPSF1-209ENST00000532725 C17orf50Q8WW18 174 aa16.17■□□□□ 0.18
CPSF1-209ENST00000532725 Q96M66 194 aa16.17■□□□□ 0.18
CPSF1-209ENST00000532725 RCC2Q9P258 522 aaKnown RBP16.17■□□□□ 0.18
CPSF1-209ENST00000532725 KIF25Q9UIL4 384 aa16.17■□□□□ 0.18
CPSF1-209ENST00000532725 STAB1Q9NY15 2570 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 TRAV1-2A0A0B4J238 106 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 SHISA3A0PJX4 238 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A10PA6NDY2 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A18PA6NE21 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A16PA6NEW6 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A20PA6NIJ5 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A8PA6NJQ4 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A7PA6NKC0 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A22PA8MWA6 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A12PA8MX19 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A5PA8MXJ8 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A23PA8MXZ1 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 RNASE1P07998 156 aaKnown RBP16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A15PP0C7V4 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A13PP0C7W8 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A14PP0C7W9 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 FAM90A24PP0C7X0 464 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 COX7A1P24310 79 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 IER3P46695 156 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 QRFPP83859 136 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 C17orf58Q2M2W7 97 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 SIGIRRQ6IA17 410 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 SLC35E4Q6ICL7 350 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 OR10K2Q6IF99 312 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 HEPN1Q6WQI6 88 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 LDLRAD3Q86YD5 345 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 ZNF565Q8N9K5 539 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 OR6M1Q8NGM8 313 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 OR13D1Q8NGV5 346 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 CST11Q9H112 138 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 ZMAT3Q9HA38 289 aaKnown RBP16.16■□□□□ 0.18
CPSF1-209ENST00000532725 OR6C3Q9NZP0 311 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 SESN1Q9Y6P5 492 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 DNHD1Q96M86 4753 aa16.16■□□□□ 0.18
CPSF1-209ENST00000532725 MEIKINA0A087WXM9 373 aa16.15■□□□□ 0.18
CPSF1-209ENST00000532725 SLC17A2O00624 439 aa16.15■□□□□ 0.18
CPSF1-209ENST00000532725 FBP1P09467 338 aa16.15■□□□□ 0.18
CPSF1-209ENST00000532725 PSMD7P51665 324 aa16.15■□□□□ 0.18
CPSF1-209ENST00000532725 TMEM86BQ8N661 226 aa16.15■□□□□ 0.18
CPSF1-209ENST00000532725 OR13A1Q8NGR1 328 aa16.15■□□□□ 0.18
CPSF1-209ENST00000532725 FAM46BQ96A09 425 aa16.15■□□□□ 0.18
CPSF1-209ENST00000532725 GAL3ST2Q9H3Q3 398 aa16.15■□□□□ 0.18
CPSF1-209ENST00000532725 LINC00574Q9H8X3 128 aa16.15■□□□□ 0.18
CPSF1-209ENST00000532725 SPACA1Q9HBV2 294 aa16.15■□□□□ 0.18
CPSF1-209ENST00000532725 V9GY05 133 aa16.15■□□□□ 0.18
CPSF1-209ENST00000532725 KBTBD11-OT1A0A1B0GTJ5 212 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms