RNA–Protein interactions for RNA: YPL006W

NCR1, Transcript of Vacuolar membrane protein, yeast

Gene NCR1, Length 3,513 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCR1	YPL006W	YLR053C	Q12026	108 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	SLP1	Q12232	587 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	FBP1	P09201	348 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	TRX1	P22217	103 aa	Known RBP	4.11	□□□□□ -1.75
NCR1	YPL006W	RRT12	P25381	491 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	YSC84	P32793	468 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	GYP6	P32806	458 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	ETR1	P38071	380 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	BIO4	P53630	237 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	HFD1	Q04458	532 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	THI7	Q05998	598 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	UBX5	Q06682	500 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	TY1B-A	O13527	1196 aa	Known RBP	4.11	□□□□□ -1.75
NCR1	YPL006W	COX11	P19516	300 aa	Known RBP	4.11	□□□□□ -1.75
NCR1	YPL006W	KIN82	P25341	720 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	RPL5	P26321	297 aa	Known RBP	4.11	□□□□□ -1.75
NCR1	YPL006W	TOA1	P32773	286 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	SIP2	P34164	415 aa	Known RBP	4.11	□□□□□ -1.75
NCR1	YPL006W	CDC27	P38042	758 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	TSC10	P38342	320 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	RGD2	P43556	714 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	MIG2	P53035	382 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	NUT1	P53114	1132 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	YNL146W	P53906	100 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	TEP1	P53916	434 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	VHS3	Q08438	674 aa		4.11	□□□□□ -1.75
NCR1	YPL006W	MOT1	P32333	1867 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	RPL24A	P04449	155 aa	Known RBP	4.1	□□□□□ -1.75
NCR1	YPL006W	MSM1	P22438	575 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	MRP4	P32902	394 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	FTR1	P40088	404 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	SNZ3	P43545	298 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	YJL007C	P47080	104 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	HLJ1	P48353	224 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	YGR117C	P53270	476 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	SNZ2	P53824	298 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	KTR5	P53966	522 aa	Predicted RBP	4.1	□□□□□ -1.75
NCR1	YPL006W	STE20	Q03497	939 aa	Known RBP	4.1	□□□□□ -1.75
NCR1	YPL006W	YET3	Q07451	203 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	YOR059C	Q08448	450 aa	Known RBP	4.1	□□□□□ -1.75
NCR1	YPL006W	ENO2	P00925	437 aa	Known RBP	4.1	□□□□□ -1.75
NCR1	YPL006W	TEF1	P02994	458 aa	Known RBP	4.1	□□□□□ -1.75
NCR1	YPL006W	CBP1	P07252	654 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	NAT1	P12945	854 aa	Known RBP	4.1	□□□□□ -1.75
NCR1	YPL006W	NPP1	P25353	742 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	CDC48	P25694	835 aa	Known RBP	4.1	□□□□□ -1.75
NCR1	YPL006W	RPC19	P28000	142 aa	Known RBP	4.1	□□□□□ -1.75
NCR1	YPL006W	URA7	P28274	579 aa	Known RBP	4.1	□□□□□ -1.75
NCR1	YPL006W	BCS1	P32839	456 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	AST1	P35183	429 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	FLC2	P39719	783 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	KHA1	P40309	873 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	YGR125W	P53273	1036 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	CEF1	Q03654	590 aa	Predicted RBP	4.1	□□□□□ -1.75
NCR1	YPL006W	ADI1	Q03677	179 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	MSH6	Q03834	1242 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	SXM1	Q04175	944 aa	Known RBP	4.1	□□□□□ -1.75
NCR1	YPL006W	YKU80	Q04437	629 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	SPE4	Q12455	300 aa		4.1	□□□□□ -1.75
NCR1	YPL006W	IMA3	P0CW40	589 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	IMA4	P0CW41	589 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	YER152C	P10356	443 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	HPR1	P17629	752 aa	Known RBP	4.09	□□□□□ -1.75
NCR1	YPL006W	RAD51	P25454	400 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	AAD3	P25612	363 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	BEM4	P39011	633 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	YER156C	P40093	338 aa	Known RBP	4.09	□□□□□ -1.75
NCR1	YPL006W	SBE2	P42223	864 aa	Known RBP	4.09	□□□□□ -1.75
NCR1	YPL006W	MCM6	P53091	1017 aa	Known RBP	4.09	□□□□□ -1.75
NCR1	YPL006W	COS6	P53344	381 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	RNY1	Q02933	434 aa	Known RBP	4.09	□□□□□ -1.75
NCR1	YPL006W	ACL4	Q03771	387 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	SMC5	Q08204	1093 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	IMA2	Q08295	589 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	SNX3	Q08826	162 aa	Known RBP	4.09	□□□□□ -1.75
NCR1	YPL006W	CSR2	Q12734	1121 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	RIF1	P29539	1916 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	YAK1	P14680	807 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	YCR015C	P25616	317 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	TVP38	P36164	337 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	CBR1	P38626	284 aa	Known RBP	4.09	□□□□□ -1.75
NCR1	YPL006W	QNS1	P38795	714 aa	Known RBP	4.09	□□□□□ -1.75
NCR1	YPL006W	YDR089W	P38966	869 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	SAW1	P39735	261 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	TAH11	P47112	604 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	HMO1	Q03973	246 aa	Known RBP	4.09	□□□□□ -1.75
NCR1	YPL006W	ATG20	Q07528	640 aa		4.09	□□□□□ -1.75
NCR1	YPL006W	LAA1	P39526	2014 aa		4.09	□□□□□ -1.76
NCR1	YPL006W	RPS9B	P05755	195 aa	Known RBP	4.09	□□□□□ -1.76
NCR1	YPL006W	PYC2	P32327	1180 aa	Known RBP	4.09	□□□□□ -1.76
NCR1	YPL006W	SWC5	P38326	303 aa		4.09	□□□□□ -1.76
NCR1	YPL006W	PCM1	P38628	557 aa	Known RBP	4.09	□□□□□ -1.76
NCR1	YPL006W	SHE10	P53075	577 aa		4.09	□□□□□ -1.76
NCR1	YPL006W	TRS130	Q03660	1102 aa		4.09	□□□□□ -1.76
NCR1	YPL006W	MDM38	Q08179	573 aa		4.09	□□□□□ -1.76
NCR1	YPL006W	SLY1	P22213	666 aa		4.08	□□□□□ -1.76
NCR1	YPL006W	UTR4	P32626	227 aa		4.08	□□□□□ -1.76
NCR1	YPL006W	GLC3	P32775	704 aa		4.08	□□□□□ -1.76
NCR1	YPL006W	SEC6	P32844	805 aa		4.08	□□□□□ -1.76
NCR1	YPL006W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 60.4 ms