RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W HDA3Q06623 655 aa3.41□□□□□ -1.86
USE1YGL098W SIL1Q08199 421 aa3.41□□□□□ -1.86
USE1YGL098W FAP7Q12055 197 aaPredicted RBP3.41□□□□□ -1.86
USE1YGL098W EMP46Q12396 444 aa3.41□□□□□ -1.86
USE1YGL098W ZRT2Q12436 422 aa3.41□□□□□ -1.86
USE1YGL098W RRP5Q05022 1729 aaKnown RBP3.41□□□□□ -1.86
USE1YGL098W CHC1P22137 1653 aaKnown RBP3.4□□□□□ -1.86
USE1YGL098W SEM1O94742 89 aa3.4□□□□□ -1.87
USE1YGL098W LEU2P04173 364 aaPredicted RBP3.4□□□□□ -1.87
USE1YGL098W RPL24AP04449 155 aaKnown RBP3.4□□□□□ -1.87
USE1YGL098W HEM1P09950 548 aaPredicted RBP3.4□□□□□ -1.87
USE1YGL098W RED1P14291 827 aa3.4□□□□□ -1.87
USE1YGL098W POL30P15873 258 aaKnown RBP3.4□□□□□ -1.87
USE1YGL098W SRV2P17555 526 aaKnown RBP3.4□□□□□ -1.87
USE1YGL098W BAS1P22035 811 aa3.4□□□□□ -1.87
USE1YGL098W SPO11P23179 398 aa3.4□□□□□ -1.87
USE1YGL098W URA1P28272 314 aaPredicted RBP3.4□□□□□ -1.87
USE1YGL098W GDA1P32621 518 aa3.4□□□□□ -1.87
USE1YGL098W RAD24P32641 659 aa3.4□□□□□ -1.87
USE1YGL098W YME1P32795 747 aa3.4□□□□□ -1.87
USE1YGL098W TPO5P36029 618 aa3.4□□□□□ -1.87
USE1YGL098W RCN1P36054 211 aa3.4□□□□□ -1.87
USE1YGL098W GLG1P36143 616 aa3.4□□□□□ -1.87
USE1YGL098W MRX3P38172 270 aa3.4□□□□□ -1.87
USE1YGL098W STP2P38704 541 aa3.4□□□□□ -1.87
USE1YGL098W YHL012WP38709 493 aa3.4□□□□□ -1.87
USE1YGL098W YER137CP40083 148 aaKnown RBP3.4□□□□□ -1.87
USE1YGL098W SER33P40510 469 aa3.4□□□□□ -1.87
USE1YGL098W PAC11P40960 533 aa3.4□□□□□ -1.87
USE1YGL098W GCD14P46959 383 aaPredicted RBP3.4□□□□□ -1.87
USE1YGL098W YGR237CP50089 785 aa3.4□□□□□ -1.87
USE1YGL098W MRM2P53123 320 aa3.4□□□□□ -1.87
USE1YGL098W RBG2P53295 368 aaKnown RBP3.4□□□□□ -1.87
USE1YGL098W YDR179W-AQ03983 463 aa3.4□□□□□ -1.87
USE1YGL098W URH1Q04179 340 aa3.4□□□□□ -1.87
USE1YGL098W TMA64Q04600 565 aaKnown RBP3.4□□□□□ -1.87
USE1YGL098W RRN11Q04712 507 aa3.4□□□□□ -1.87
USE1YGL098W VIP1Q06685 1146 aaKnown RBP3.4□□□□□ -1.87
USE1YGL098W MDM36Q06820 579 aa3.4□□□□□ -1.87
USE1YGL098W AFT2Q08957 416 aa3.4□□□□□ -1.87
USE1YGL098W CDC53Q12018 815 aaKnown RBP3.4□□□□□ -1.87
USE1YGL098W YBL113CQ7M4S9 792 aa3.4□□□□□ -1.87
USE1YGL098W BUD3P25558 1636 aa3.4□□□□□ -1.87
USE1YGL098W LAM4P38800 1345 aa3.4□□□□□ -1.87
USE1YGL098W TUS1Q06412 1307 aa3.4□□□□□ -1.87
USE1YGL098W RPA190P10964 1664 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W COQ4O13525 335 aa3.39□□□□□ -1.87
USE1YGL098W PYC1P11154 1178 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W GFA1P14742 717 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W POL3P15436 1097 aa3.39□□□□□ -1.87
USE1YGL098W SPO12P17123 173 aa3.39□□□□□ -1.87
USE1YGL098W KGD2P19262 463 aaPredicted RBP3.39□□□□□ -1.87
USE1YGL098W PHO3P24031 467 aa3.39□□□□□ -1.87
USE1YGL098W SPS22P25380 463 aa3.39□□□□□ -1.87
USE1YGL098W RPC53P25441 422 aa3.39□□□□□ -1.87
USE1YGL098W POL4P25615 582 aa3.39□□□□□ -1.87
USE1YGL098W PEP3P27801 918 aa3.39□□□□□ -1.87
USE1YGL098W MCM4P30665 933 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W ACP1P32463 125 aa3.39□□□□□ -1.87
USE1YGL098W HXT1P32465 570 aa3.39□□□□□ -1.87
USE1YGL098W GYP6P32806 458 aa3.39□□□□□ -1.87
USE1YGL098W AST1P35183 429 aa3.39□□□□□ -1.87
USE1YGL098W YET1P35723 206 aa3.39□□□□□ -1.87
USE1YGL098W RSM22P36056 628 aa3.39□□□□□ -1.87
USE1YGL098W VPS51P36116 164 aa3.39□□□□□ -1.87
USE1YGL098W PGM2P37012 569 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W MNN2P38069 597 aa3.39□□□□□ -1.87
USE1YGL098W RCK2P38623 610 aa3.39□□□□□ -1.87
USE1YGL098W SSF1P38789 453 aaPredicted RBP3.39□□□□□ -1.87
USE1YGL098W RPN10P38886 268 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W RIC1P40395 1056 aa3.39□□□□□ -1.87
USE1YGL098W DIM1P41819 318 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W APS3P47064 194 aa3.39□□□□□ -1.87
USE1YGL098W RPC17P47076 161 aa3.39□□□□□ -1.87
USE1YGL098W SRB7P47822 140 aa3.39□□□□□ -1.87
USE1YGL098W GNP1P48813 663 aa3.39□□□□□ -1.87
USE1YGL098W OCA1P50946 238 aaPredicted RBP3.39□□□□□ -1.87
USE1YGL098W LIF1P53150 421 aa3.39□□□□□ -1.87
USE1YGL098W CPR6P53691 371 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W PGA2P53903 129 aa3.39□□□□□ -1.87
USE1YGL098W IMP4P53941 290 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W PRO2P54885 456 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W VPS64Q03944 604 aa3.39□□□□□ -1.87
USE1YGL098W URC2Q04411 772 aa3.39□□□□□ -1.87
USE1YGL098W SOV1Q04748 898 aa3.39□□□□□ -1.87
USE1YGL098W COA4Q05809 96 aa3.39□□□□□ -1.87
USE1YGL098W YLR407WQ06070 228 aa3.39□□□□□ -1.87
USE1YGL098W RGC1Q06108 1083 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W YPQ2Q06328 317 aa3.39□□□□□ -1.87
USE1YGL098W ESF1Q06344 628 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W PMT7Q06644 662 aa3.39□□□□□ -1.87
USE1YGL098W ADY3Q07732 790 aa3.39□□□□□ -1.87
USE1YGL098W YLR001CQ07895 862 aa3.39□□□□□ -1.87
USE1YGL098W YEH2Q07950 538 aa3.39□□□□□ -1.87
USE1YGL098W RPN8Q08723 338 aaKnown RBP3.39□□□□□ -1.87
USE1YGL098W SOG2Q08817 791 aa3.39□□□□□ -1.87
USE1YGL098W YPL277CQ08989 487 aa3.39□□□□□ -1.87
USE1YGL098W ICL2Q12031 575 aa3.39□□□□□ -1.87
USE1YGL098W DAS2Q12084 232 aa3.39□□□□□ -1.87
USE1YGL098W RIB2Q12362 591 aaKnown RBP3.39□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 16.8 ms