RNA–Protein interactions for RNA: YDR460W

TFB3, Transcript of Subunit of TFIIH and nucleotide excision repair factor 3 complexes, yeast

Gene TFB3, Length 966 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB3	YDR460W	SEC63	P14906	663 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	YAP1	P19880	650 aa	Known RBP	4.82	□□□□□ -1.64
TFB3	YDR460W	BUD23	P25627	275 aa	Predicted RBP	4.82	□□□□□ -1.64
TFB3	YDR460W	RAD27	P26793	382 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	SIN4	P32259	974 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	EFT1	P32324	842 aa	Known RBP	4.82	□□□□□ -1.64
TFB3	YDR460W	SMY1	P32364	656 aa	Known RBP	4.82	□□□□□ -1.64
TFB3	YDR460W	SMY2	P32909	740 aa	Known RBP	4.82	□□□□□ -1.64
TFB3	YDR460W	RIB7	P33312	244 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	PTH2	P34222	208 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	RIP-Chip
TFB3	YDR460W	RFT1	P38206	574 aa	Predicted RBP	4.82	□□□□□ -1.64
TFB3	YDR460W	MUM2	P38236	366 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	IFA38	P38286	347 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	TDA3	P38758	523 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	YER137C	P40083	148 aa	Known RBP	4.82	□□□□□ -1.64
TFB3	YDR460W	MPS2	P53159	387 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	NSG2	P53898	299 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	IMP4	P53941	290 aa	Known RBP	4.82	□□□□□ -1.64
TFB3	YDR460W	SIW14	P53965	281 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	TFB2	Q02939	513 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	CEF1	Q03654	590 aa	Predicted RBP	4.82	□□□□□ -1.64
TFB3	YDR460W	TDA6	Q06466	467 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	YLR031W	Q07978	186 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	YOR223W	Q12015	292 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	NYV1	Q12255	253 aa		4.82	□□□□□ -1.64
TFB3	YDR460W	RPO41	P13433	1351 aa	Known RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	RPL6B	P05739	176 aa	Known RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	KIN3	P22209	435 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
TFB3	YDR460W	SPB1	P25582	841 aa	Predicted RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	PAP1	P29468	568 aa	Known RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	MGM1	P32266	881 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	STE5	P32917	917 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	UBC6	P33296	250 aa	Predicted RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	MDJ1	P35191	511 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	YHR020W	P38708	688 aa	Known RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	RTS1	P38903	757 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	HXT13	P39924	564 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	ULP2	P40537	1034 aa	Predicted RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	SNX4	P47057	423 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	ENT3	P47160	408 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	FAA4	P47912	694 aa	Known RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	YPT11	P48559	417 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	BRO1	P48582	844 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	VMA10	P48836	114 aa	Known RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	GCV2	P49095	1034 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	BUD9	P53226	547 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	MDR1	P53258	950 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	DCP2	P53550	970 aa	Known RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	HXT17	P53631	564 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	CNM67	P53865	581 aa	Known RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	HXT15	P54854	567 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	ROD1	Q02805	837 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	PNG1	Q02890	363 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	GDE1	Q02979	1223 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	DML1	Q03652	475 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	HMO1	Q03973	246 aa	Known RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	EST2	Q06163	884 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	SEC10	Q06245	871 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	GAS5	Q08193	484 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	TMA46	Q12000	345 aa	Known RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	ALG6	Q12001	544 aa	Known RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	GNT1	Q12096	491 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	TY1A-NL1	Q12391	440 aa	Known RBP	4.81	□□□□□ -1.64
TFB3	YDR460W	SPO21	Q12411	609 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	YOL098C	Q12496	1037 aa		4.81	□□□□□ -1.64
TFB3	YDR460W	PGK1	P00560	416 aa	Known RBP	4.8	□□□□□ -1.64
TFB3	YDR460W	THS1	P04801	734 aa	Known RBP	4.8	□□□□□ -1.64
TFB3	YDR460W	RAD1	P06777	1100 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	PHO13	P19881	312 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	RET1	P22276	1149 aa	Known RBP	4.8	□□□□□ -1.64
TFB3	YDR460W	UBA1	P22515	1024 aa	Known RBP	4.8	□□□□□ -1.64
TFB3	YDR460W	ARG1	P22768	420 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	GSY1	P23337	708 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	TSR4	P25040	408 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	MSH2	P25847	964 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	KIP1	P28742	1111 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	SFA1	P32771	386 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	ADD66	P36040	267 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	JNM1	P36224	373 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	YHL017W	P38745	532 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	YNG2	P38806	282 aa	Known RBP	4.8	□□□□□ -1.64
TFB3	YDR460W	SPO74	P45819	413 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	YJR039W	P47107	1121 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	URB2	P47108	1174 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	IMD4	P50094	524 aa	Known RBP	4.8	□□□□□ -1.64
TFB3	YDR460W	KAP114	P53067	1004 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	ERP6	P53198	216 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	EFM5	P53200	248 aa	Known RBP	4.8	□□□□□ -1.64
TFB3	YDR460W	YGR053C	P53234	283 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	CAF130	P53280	1122 aa	Predicted RBP	4.8	□□□□□ -1.64
TFB3	YDR460W	TMA20	P89886	181 aa	Predicted RBP	4.8	□□□□□ -1.64
TFB3	YDR460W	TAP42	Q04372	366 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	GTB1	Q04924	702 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	DYN3	Q04949	312 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	HCR1	Q05775	265 aa	Known RBP	4.8	□□□□□ -1.64
TFB3	YDR460W	THI22	Q06490	572 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	MCM21	Q06675	368 aa		4.8	□□□□□ -1.64
TFB3	YDR460W	VAC14	Q06708	880 aa		4.8	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms