RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 PNISRQ8TF01 805 aaKnown RBP16.86■□□□□ 0.29
COL5A1-208ENST00000618395 HAUS8Q9BT25 410 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 CNNM1Q9NRU3 951 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 PPP4R3AQ6IN85 833 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 DACT1Q9NYF0 836 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 EVI5O60447 810 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 SLC4A2P04920 1241 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.86■□□□□ 0.29
COL5A1-208ENST00000618395 HSP90AA4PQ58FG1 418 aa16.85■□□□□ 0.29
COL5A1-208ENST00000618395 SNX21Q969T3 373 aa16.85■□□□□ 0.29
COL5A1-208ENST00000618395 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.85■□□□□ 0.29
COL5A1-208ENST00000618395 GNGT1P63211 74 aa16.85■□□□□ 0.29
COL5A1-208ENST00000618395 GOLGA8BA8MQT2 603 aa16.85■□□□□ 0.29
COL5A1-208ENST00000618395 PPP1R12AO14974 1030 aaPredicted RBP16.85■□□□□ 0.29
COL5A1-208ENST00000618395 UBXN1Q04323 297 aa16.85■□□□□ 0.29
COL5A1-208ENST00000618395 BMP2KLQ5H9B9 411 aa16.85■□□□□ 0.29
COL5A1-208ENST00000618395 PFDN4Q9NQP4 134 aa16.85■□□□□ 0.29
COL5A1-208ENST00000618395 CTTNBP2NLQ9P2B4 639 aa16.85■□□□□ 0.29
COL5A1-208ENST00000618395 TTF2Q9UNY4 1162 aaKnown RBP16.85■□□□□ 0.29
COL5A1-208ENST00000618395 MKL2Q9ULH7 1088 aa16.85■□□□□ 0.29
COL5A1-208ENST00000618395 RTL1A6NKG5 1358 aa16.85■□□□□ 0.29
COL5A1-208ENST00000618395 GEN1Q17RS7 908 aa16.85■□□□□ 0.29
COL5A1-208ENST00000618395 NRBF2Q96F24 287 aa16.85■□□□□ 0.29
COL5A1-208ENST00000618395 MAGEA9P43362 315 aa16.84■□□□□ 0.29
COL5A1-208ENST00000618395 HELBQ8NG08 1087 aaPredicted RBP16.84■□□□□ 0.29
COL5A1-208ENST00000618395 ATP6V0A2Q9Y487 856 aa16.84■□□□□ 0.29
COL5A1-208ENST00000618395 UBA7P41226 1012 aa16.84■□□□□ 0.29
COL5A1-208ENST00000618395 MMS22LQ6ZRQ5 1243 aa16.84■□□□□ 0.29
COL5A1-208ENST00000618395 CSRNP2Q9H175 543 aa16.84■□□□□ 0.29
COL5A1-208ENST00000618395 SLC12A7Q9Y666 1083 aa16.84■□□□□ 0.29
COL5A1-208ENST00000618395 GAS8O95995 478 aa16.84■□□□□ 0.29
COL5A1-208ENST00000618395 PSMA7O14818 248 aa16.84■□□□□ 0.29
COL5A1-208ENST00000618395 SKIP12755 728 aa16.84■□□□□ 0.29
COL5A1-208ENST00000618395 LONP1P36776 959 aaKnown RBP16.84■□□□□ 0.29
COL5A1-208ENST00000618395 PSME1Q06323 249 aa16.84■□□□□ 0.29
COL5A1-208ENST00000618395 IQCA1Q86XH1 822 aa16.84■□□□□ 0.29
COL5A1-208ENST00000618395 AK9Q5TCS8 1911 aa16.84■□□□□ 0.29
COL5A1-208ENST00000618395 KIF1BPQ96EK5 621 aa16.83■□□□□ 0.29
COL5A1-208ENST00000618395 RAP1GDS1P52306 607 aa16.83■□□□□ 0.29
COL5A1-208ENST00000618395 CCT6BQ92526 530 aa16.83■□□□□ 0.29
COL5A1-208ENST00000618395 MRPS27Q92552 414 aaKnown RBP16.83■□□□□ 0.28
COL5A1-208ENST00000618395 ZNF500O60304 480 aaPredicted RBP16.83■□□□□ 0.28
COL5A1-208ENST00000618395 CCT5P48643 541 aa16.83■□□□□ 0.28
COL5A1-208ENST00000618395 UAP1Q16222 522 aaPredicted RBP16.83■□□□□ 0.28
COL5A1-208ENST00000618395 TSR2Q969E8 191 aaKnown RBP16.83■□□□□ 0.28
COL5A1-208ENST00000618395 RPGRIP1Q96KN7 1286 aa16.83■□□□□ 0.28
COL5A1-208ENST00000618395 RILPQ96NA2 401 aa16.83■□□□□ 0.28
COL5A1-208ENST00000618395 ARHGEF9O43307 516 aa16.83■□□□□ 0.28
COL5A1-208ENST00000618395 POLR3DP05423 398 aaPredicted RBP16.83■□□□□ 0.28
COL5A1-208ENST00000618395 MTHFSP49914 203 aa16.83■□□□□ 0.28
COL5A1-208ENST00000618395 E2F5Q15329 346 aa16.83■□□□□ 0.28
COL5A1-208ENST00000618395 HHATQ5VTY9 493 aa16.83■□□□□ 0.28
COL5A1-208ENST00000618395 AMOTQ4VCS5 1084 aa16.83■□□□□ 0.28
COL5A1-208ENST00000618395 PLCB3Q01970 1234 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 RSPH3Q86UC2 560 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 PDZD8Q8NEN9 1154 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 TROVE2P10155 538 aaKnown RBP eCLIP16.82■□□□□ 0.28
COL5A1-208ENST00000618395 USP5P45974 858 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 SEL1L2Q5TEA6 688 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 SYCP3Q8IZU3 236 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 ZNF287Q9HBT7 754 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 GOLGA8AA7E2F4 631 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 CCDC159P0C7I6 412 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 SH3BP5O60239 455 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 DTNBP1Q96EV8 351 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 NEK1Q96PY6 1258 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 GJC2Q5T442 439 aaPredicted RBP16.82■□□□□ 0.28
COL5A1-208ENST00000618395 C16orf87Q6PH81 154 aa16.82■□□□□ 0.28
COL5A1-208ENST00000618395 KIF6Q6ZMV9 814 aa16.81■□□□□ 0.28
COL5A1-208ENST00000618395 ATG3Q9NT62 314 aa16.81■□□□□ 0.28
COL5A1-208ENST00000618395 ARHGAP42A6NI28 874 aa16.81■□□□□ 0.28
COL5A1-208ENST00000618395 CRCPO75575 148 aa16.81■□□□□ 0.28
COL5A1-208ENST00000618395 PPP2R1AP30153 589 aa16.81■□□□□ 0.28
COL5A1-208ENST00000618395 CCDC194A0A1B0GVG4 234 aa16.81■□□□□ 0.28
COL5A1-208ENST00000618395 CCT2P78371 535 aaKnown RBP16.81■□□□□ 0.28
COL5A1-208ENST00000618395 SERPINB6P35237 376 aa16.81■□□□□ 0.28
COL5A1-208ENST00000618395 NCAPGQ9BPX3 1015 aa16.81■□□□□ 0.28
COL5A1-208ENST00000618395 FAM169AQ9Y6X4 670 aa16.81■□□□□ 0.28
COL5A1-208ENST00000618395 STAT6P42226 847 aa16.81■□□□□ 0.28
COL5A1-208ENST00000618395 RRAGBQ5VZM2 374 aa16.81■□□□□ 0.28
COL5A1-208ENST00000618395 TMX3Q96JJ7 454 aa16.81■□□□□ 0.28
COL5A1-208ENST00000618395 RBM26Q5T8P6 1007 aaKnown RBP16.81■□□□□ 0.28
COL5A1-208ENST00000618395 SUFUQ9UMX1 484 aa16.8■□□□□ 0.28
COL5A1-208ENST00000618395 FRMD4BQ9Y2L6 1034 aa16.8■□□□□ 0.28
COL5A1-208ENST00000618395 TRIM14Q14142 442 aa16.8■□□□□ 0.28
COL5A1-208ENST00000618395 TAF11Q15544 211 aa16.8■□□□□ 0.28
COL5A1-208ENST00000618395 CYP26C1Q6V0L0 522 aa16.8■□□□□ 0.28
COL5A1-208ENST00000618395 TMEM110-MUSTN1A8MSY1 372 aa16.8■□□□□ 0.28
COL5A1-208ENST00000618395 ARID5AQ03989 594 aa16.8■□□□□ 0.28
COL5A1-208ENST00000618395 KLHL34Q8N239 644 aa16.8■□□□□ 0.28
COL5A1-208ENST00000618395 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.8■□□□□ 0.28
COL5A1-208ENST00000618395 RMDN2Q96LZ7 410 aa16.8■□□□□ 0.28
COL5A1-208ENST00000618395 IFT88Q13099 833 aa16.8■□□□□ 0.28
COL5A1-208ENST00000618395 TTF1Q15361 905 aaPredicted RBP16.8■□□□□ 0.28
COL5A1-208ENST00000618395 EEF1DP29692 281 aaKnown RBP16.8■□□□□ 0.28
COL5A1-208ENST00000618395 ST13P4Q8IZP2 240 aaPredicted RBP16.8■□□□□ 0.28
COL5A1-208ENST00000618395 CFAP65Q6ZU64 1925 aaKnown RBP16.8■□□□□ 0.28
COL5A1-208ENST00000618395 PALM3A6NDB9 673 aaPredicted RBP16.8■□□□□ 0.28
COL5A1-208ENST00000618395 KRT71Q3SY84 523 aa16.79■□□□□ 0.28
COL5A1-208ENST00000618395 AIDAQ96BJ3 306 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms