RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 MKRN1Q9UHC7 482 aaKnown RBP12.51□□□□□ -0.41
LIG3-203ENST00000585370 HACL1Q9UJ83 578 aa12.51□□□□□ -0.41
LIG3-203ENST00000585370 UQCRFS1P1P0C7P4 283 aa12.5□□□□□ -0.41
LIG3-203ENST00000585370 EPHX2P34913 555 aa12.5□□□□□ -0.41
LIG3-203ENST00000585370 HSPA4P34932 840 aa12.5□□□□□ -0.41
LIG3-203ENST00000585370 SLC4A3P48751 1232 aa12.5□□□□□ -0.41
LIG3-203ENST00000585370 PUM3Q15397 648 aaKnown RBP12.5□□□□□ -0.41
LIG3-203ENST00000585370 EAPPQ56P03 285 aaPredicted RBP12.5□□□□□ -0.41
LIG3-203ENST00000585370 CC2D2BQ6DHV5 1058 aa12.5□□□□□ -0.41
LIG3-203ENST00000585370 VGLL2Q8N8G2 317 aa12.5□□□□□ -0.41
LIG3-203ENST00000585370 LPIN2Q92539 896 aa12.5□□□□□ -0.41
LIG3-203ENST00000585370 RBM17Q96I25 401 aaKnown RBP12.5□□□□□ -0.41
LIG3-203ENST00000585370 CRAMP1Q96RY5 1269 aa12.5□□□□□ -0.41
LIG3-203ENST00000585370 LSG1Q9H089 658 aaKnown RBP12.5□□□□□ -0.41
LIG3-203ENST00000585370 PAG1Q9NWQ8 432 aa12.5□□□□□ -0.41
LIG3-203ENST00000585370 AK9Q5TCS8 1911 aa12.5□□□□□ -0.41
LIG3-203ENST00000585370 COL4A5P29400 1685 aa12.49□□□□□ -0.41
LIG3-203ENST00000585370 RIC1Q4ADV7 1423 aa12.49□□□□□ -0.41
LIG3-203ENST00000585370 ZFYP08048 801 aaPredicted RBP12.49□□□□□ -0.41
LIG3-203ENST00000585370 SLC5A1P13866 664 aa12.49□□□□□ -0.41
LIG3-203ENST00000585370 TTF1Q15361 905 aaPredicted RBP12.49□□□□□ -0.41
LIG3-203ENST00000585370 ANKRD18AQ8IVF6 992 aa12.49□□□□□ -0.41
LIG3-203ENST00000585370 GPC2Q8N158 579 aa12.49□□□□□ -0.41
LIG3-203ENST00000585370 JDP2Q8WYK2 163 aa12.49□□□□□ -0.41
LIG3-203ENST00000585370 DNAJC2Q99543 621 aaKnown RBP12.49□□□□□ -0.41
LIG3-203ENST00000585370 HELLSQ9NRZ9 838 aa12.49□□□□□ -0.41
LIG3-203ENST00000585370 K7ELQ4 463 aaPredicted RBP12.48□□□□□ -0.41
LIG3-203ENST00000585370 FGFR2P21802 821 aa12.48□□□□□ -0.41
LIG3-203ENST00000585370 NMIQ13287 307 aaPredicted RBP12.48□□□□□ -0.41
LIG3-203ENST00000585370 KCNB2Q92953 911 aa12.48□□□□□ -0.41
LIG3-203ENST00000585370 BSDC1Q9NW68 430 aaPredicted RBP12.48□□□□□ -0.41
LIG3-203ENST00000585370 CLEC11AQ9Y240 323 aa12.48□□□□□ -0.41
LIG3-203ENST00000585370 SPEF2Q9C093 1822 aa12.47□□□□□ -0.41
LIG3-203ENST00000585370 PPEF1O14829 653 aaPredicted RBP12.47□□□□□ -0.41
LIG3-203ENST00000585370 EIF6P56537 245 aaKnown RBP12.47□□□□□ -0.41
LIG3-203ENST00000585370 MCMDC2Q4G0Z9 681 aa12.47□□□□□ -0.41
LIG3-203ENST00000585370 GRIPAP1Q4V328 841 aa12.47□□□□□ -0.41
LIG3-203ENST00000585370 RNF20Q5VTR2 975 aa12.47□□□□□ -0.41
LIG3-203ENST00000585370 MAP1SQ66K74 1059 aaPredicted RBP12.47□□□□□ -0.41
LIG3-203ENST00000585370 ZSCAN25Q6NSZ9 544 aa12.47□□□□□ -0.41
LIG3-203ENST00000585370 PNMA8AQ86V59 439 aaPredicted RBP12.47□□□□□ -0.41
LIG3-203ENST00000585370 TNS4Q8IZW8 715 aa12.47□□□□□ -0.41
LIG3-203ENST00000585370 LARGE2Q8N3Y3 721 aa12.47□□□□□ -0.41
LIG3-203ENST00000585370 MAP4K1Q92918 833 aa12.47□□□□□ -0.41
LIG3-203ENST00000585370 ANP32EQ9BTT0 268 aa12.47□□□□□ -0.41
LIG3-203ENST00000585370 GJA3Q9Y6H8 435 aa12.47□□□□□ -0.41
LIG3-203ENST00000585370 LAMB2P55268 1798 aa12.46□□□□□ -0.41
LIG3-203ENST00000585370 CNTNAP1P78357 1384 aa12.46□□□□□ -0.41
LIG3-203ENST00000585370 CCDC171Q6TFL3 1326 aa12.46□□□□□ -0.41
LIG3-203ENST00000585370 TMEM88BA6NKF7 163 aa12.46□□□□□ -0.41
LIG3-203ENST00000585370 GOLIM4O00461 696 aa12.46□□□□□ -0.41
LIG3-203ENST00000585370 ZKSCAN1P17029 563 aaPredicted RBP12.46□□□□□ -0.41
LIG3-203ENST00000585370 UBE4AQ14139 1066 aa12.46□□□□□ -0.41
LIG3-203ENST00000585370 TM6SF1Q9BZW5 370 aa12.46□□□□□ -0.41
LIG3-203ENST00000585370 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.46□□□□□ -0.419e-7■□□□□ 9.1
LIG3-203ENST00000585370 SEC31BQ9NQW1 1179 aa12.46□□□□□ -0.41
LIG3-203ENST00000585370 HMG20BQ9P0W2 317 aa12.46□□□□□ -0.41
LIG3-203ENST00000585370 CIZ1Q9ULV3 898 aaPredicted RBP12.46□□□□□ -0.41
LIG3-203ENST00000585370 ATP6V0A2Q9Y487 856 aa12.46□□□□□ -0.41
LIG3-203ENST00000585370 ADAMTSL1Q8N6G6 1762 aa12.46□□□□□ -0.42
LIG3-203ENST00000585370 RNF113AO15541 343 aaKnown RBP12.45□□□□□ -0.42
LIG3-203ENST00000585370 ARID4AP29374 1257 aaPredicted RBP12.45□□□□□ -0.42
LIG3-203ENST00000585370 ADORA1P30542 326 aa12.45□□□□□ -0.42
LIG3-203ENST00000585370 EPS15P42566 896 aa12.45□□□□□ -0.42
LIG3-203ENST00000585370 VEGFBP49765 207 aa12.45□□□□□ -0.42
LIG3-203ENST00000585370 SCNN1DP51172 638 aa12.45□□□□□ -0.42
LIG3-203ENST00000585370 NEK4P51957 841 aa12.45□□□□□ -0.42
LIG3-203ENST00000585370 RPS8P62241 208 aaKnown RBP12.45□□□□□ -0.42
LIG3-203ENST00000585370 NECTIN1Q15223 517 aa12.45□□□□□ -0.42
LIG3-203ENST00000585370 FAM227BQ96M60 508 aa12.45□□□□□ -0.42
LIG3-203ENST00000585370 ANKRD2Q9GZV1 360 aa12.45□□□□□ -0.42
LIG3-203ENST00000585370 CHMP5Q9NZZ3 219 aa12.45□□□□□ -0.42
LIG3-203ENST00000585370 U3KPZ7 1027 aaPredicted RBP12.45□□□□□ -0.42
LIG3-203ENST00000585370 MED23Q9ULK4 1368 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 A0A0D9SFI3 127 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 ZBTB22O15209 634 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 TAF5LO75529 589 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 HSP90AA1P07900 732 aaKnown RBP12.44□□□□□ -0.42
LIG3-203ENST00000585370 PSMA5P28066 241 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 KCNJ4P48050 445 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 CHRNDQ07001 517 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 TSGA10IPQ3SY00 556 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 ZMYM1Q5SVZ6 1142 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 CCDC102BQ68D86 513 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 DDX46Q7L014 1031 aaKnown RBP12.44□□□□□ -0.42
LIG3-203ENST00000585370 RTFDC1Q9BY42 306 aaPredicted RBP12.44□□□□□ -0.42
LIG3-203ENST00000585370 IL25Q9H293 177 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 ANTXR1Q9H6X2 564 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 CWC22Q9HCG8 908 aaKnown RBP12.44□□□□□ -0.42
LIG3-203ENST00000585370 GNL3LQ9NVN8 582 aaKnown RBP12.44□□□□□ -0.42
LIG3-203ENST00000585370 LTBP1Q14766 1721 aa12.44□□□□□ -0.42
LIG3-203ENST00000585370 DDX60Q8IY21 1712 aaKnown RBP12.44□□□□□ -0.42
LIG3-203ENST00000585370 PPIP5K2O43314 1243 aa12.43□□□□□ -0.42
LIG3-203ENST00000585370 CAPN15O75808 1086 aa12.43□□□□□ -0.42
LIG3-203ENST00000585370 BBOX1O75936 387 aa12.43□□□□□ -0.42
LIG3-203ENST00000585370 PTH1RQ03431 593 aa12.43□□□□□ -0.42
LIG3-203ENST00000585370 KRT32Q14532 448 aa12.43□□□□□ -0.42
LIG3-203ENST00000585370 AOC3Q16853 763 aa12.43□□□□□ -0.42
LIG3-203ENST00000585370 SP8Q8IXZ3 490 aa12.43□□□□□ -0.42
LIG3-203ENST00000585370 NIM1KQ8IY84 436 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms