RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	SYNE3	Q6ZMZ3	975 aa		19.91	■□□□□ 0.78
VPS53-215	ENST00000573028	TMC6	Q7Z403	805 aa		19.91	■□□□□ 0.78
VPS53-215	ENST00000573028	PRC1	O43663	620 aa		19.91	■□□□□ 0.78
VPS53-215	ENST00000573028	MARCKS	P29966	332 aa	Predicted RBP	19.91	■□□□□ 0.78
VPS53-215	ENST00000573028	FMR1NB	Q8N0W7	255 aa	Predicted RBP	19.91	■□□□□ 0.78
VPS53-215	ENST00000573028	ZNF274	Q96GC6	653 aa	Predicted RBP	19.91	■□□□□ 0.78
VPS53-215	ENST00000573028	IFNK	Q9P0W0	207 aa		19.91	■□□□□ 0.78
VPS53-215	ENST00000573028	RFX7	Q2KHR2	1363 aa		19.9	■□□□□ 0.78
VPS53-215	ENST00000573028	RXRA	P19793	462 aa		19.9	■□□□□ 0.78
VPS53-215	ENST00000573028	TAF7L	Q5H9L4	462 aa		19.9	■□□□□ 0.78
VPS53-215	ENST00000573028	RGPD5	Q99666	1765 aa		19.9	■□□□□ 0.78
VPS53-215	ENST00000573028	CCZ1B	P86790	482 aa		19.9	■□□□□ 0.78
VPS53-215	ENST00000573028	CCZ1	P86791	482 aa	Predicted RBP	19.9	■□□□□ 0.78
VPS53-215	ENST00000573028	IMMT	Q16891	758 aa	Known RBP	19.9	■□□□□ 0.78
VPS53-215	ENST00000573028	RALYL	Q86SE5	291 aa	Known RBP	19.9	■□□□□ 0.78
VPS53-215	ENST00000573028	PALLD	Q8WX93	1383 aa		19.9	■□□□□ 0.78
VPS53-215	ENST00000573028	ADAL	Q6DHV7	355 aa		19.89	■□□□□ 0.77
VPS53-215	ENST00000573028	LINC00301	Q8NCQ3	95 aa		19.89	■□□□□ 0.77
VPS53-215	ENST00000573028	XPO4	Q9C0E2	1151 aa	Known RBP	19.89	■□□□□ 0.77
VPS53-215	ENST00000573028	SPTLC2	O15270	562 aa		19.89	■□□□□ 0.77
VPS53-215	ENST00000573028	NEMF	O60524	1076 aa		19.89	■□□□□ 0.77
VPS53-215	ENST00000573028	FGA	P02671	866 aa		19.89	■□□□□ 0.77
VPS53-215	ENST00000573028	CCDC158	Q5M9N0	1113 aa		19.89	■□□□□ 0.77
VPS53-215	ENST00000573028	SALL1	Q9NSC2	1324 aa		19.89	■□□□□ 0.77
VPS53-215	ENST00000573028	SLC3A2	P08195	630 aa	Known RBP	19.88	■□□□□ 0.77
VPS53-215	ENST00000573028	LMOD1	P29536	600 aa	Predicted RBP	19.88	■□□□□ 0.77
VPS53-215	ENST00000573028	CCDC57	Q2TAC2	916 aa		19.88	■□□□□ 0.77
VPS53-215	ENST00000573028	AGXT2	Q9BYV1	514 aa		19.88	■□□□□ 0.77
VPS53-215	ENST00000573028	KIAA1468	Q9P260	1216 aa		19.88	■□□□□ 0.77
VPS53-215	ENST00000573028	SCARF1	Q14162	830 aa		19.88	■□□□□ 0.77
VPS53-215	ENST00000573028	RTEL1	Q9NZ71	1219 aa		19.88	■□□□□ 0.77
VPS53-215	ENST00000573028	CCAR2	Q8N163	923 aa	Known RBP	19.87	■□□□□ 0.77
VPS53-215	ENST00000573028	AIFM3	Q96NN9	605 aa		19.87	■□□□□ 0.77
VPS53-215	ENST00000573028	RBM6	P78332	1123 aa	Known RBP	19.87	■□□□□ 0.77
VPS53-215	ENST00000573028	PTPN21	Q16825	1174 aa		19.87	■□□□□ 0.77
VPS53-215	ENST00000573028	CTNNA3	Q9UI47	895 aa		19.87	■□□□□ 0.77
VPS53-215	ENST00000573028	SLIT3	O75094	1523 aa		19.87	■□□□□ 0.77
VPS53-215	ENST00000573028	GNL2	Q13823	731 aa	Known RBP	19.87	■□□□□ 0.77
VPS53-215	ENST00000573028	ATL3	Q6DD88	541 aa		19.87	■□□□□ 0.77
VPS53-215	ENST00000573028	CGN	Q9P2M7	1197 aa	Known RBP	19.87	■□□□□ 0.77
VPS53-215	ENST00000573028	DENND2A	Q9ULE3	1009 aa		19.87	■□□□□ 0.77
VPS53-215	ENST00000573028	APP	P05067	770 aa		19.86	■□□□□ 0.77
VPS53-215	ENST00000573028	ZAP70	P43403	619 aa		19.86	■□□□□ 0.77
VPS53-215	ENST00000573028	MYSM1	Q5VVJ2	828 aa		19.86	■□□□□ 0.77
VPS53-215	ENST00000573028	KIF18A	Q8NI77	898 aa		19.86	■□□□□ 0.77
VPS53-215	ENST00000573028	XAGE2	Q96GT9	111 aa		19.86	■□□□□ 0.77
VPS53-215	ENST00000573028	PUS7L	Q9H0K6	701 aa	Known RBP	19.86	■□□□□ 0.77
VPS53-215	ENST00000573028	KIF28P	B7ZC32	967 aa		19.86	■□□□□ 0.77
VPS53-215	ENST00000573028	ZNF202	O95125	648 aa		19.86	■□□□□ 0.77
VPS53-215	ENST00000573028	ELF2	Q15723	593 aa		19.86	■□□□□ 0.77
VPS53-215	ENST00000573028	NBPF11	Q86T75	865 aa		19.86	■□□□□ 0.77
VPS53-215	ENST00000573028	FBXO18	Q8NFZ0	1043 aa		19.86	■□□□□ 0.77
VPS53-215	ENST00000573028	AFDN	P55196	1824 aa	Known RBP	19.85	■□□□□ 0.77
VPS53-215	ENST00000573028	KCNG4	Q8TDN1	519 aa		19.85	■□□□□ 0.77
VPS53-215	ENST00000573028	FAM89A	Q96GI7	184 aa		19.85	■□□□□ 0.77
VPS53-215	ENST00000573028	SIPA1L3	O60292	1781 aa	Predicted RBP	19.85	■□□□□ 0.77
VPS53-215	ENST00000573028	ZNF213	O14771	459 aa		19.85	■□□□□ 0.77
VPS53-215	ENST00000573028	DHX16	O60231	1041 aa	Known RBP	19.85	■□□□□ 0.77
VPS53-215	ENST00000573028	NYAP1	Q6ZVC0	841 aa		19.85	■□□□□ 0.77
VPS53-215	ENST00000573028	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	19.85	■□□□□ 0.77	1e-6	■■□□□ 14.2
VPS53-215	ENST00000573028	OGFR	Q9NZT2	677 aa		19.85	■□□□□ 0.77
VPS53-215	ENST00000573028	ATF3	P18847	181 aa		19.84	■□□□□ 0.77
VPS53-215	ENST00000573028	SFPQ	P23246	707 aa	Known RBP eCLIP	19.84	■□□□□ 0.77
VPS53-215	ENST00000573028	ZNF771	Q7L3S4	317 aa	Predicted RBP	19.84	■□□□□ 0.77
VPS53-215	ENST00000573028	FEZ1	Q99689	392 aa		19.84	■□□□□ 0.77
VPS53-215	ENST00000573028	HSP90AA4P	Q58FG1	418 aa		19.83	■□□□□ 0.77
VPS53-215	ENST00000573028	UTP14C	Q5TAP6	766 aa	Known RBP	19.83	■□□□□ 0.77
VPS53-215	ENST00000573028	SYT10	Q6XYQ8	523 aa		19.83	■□□□□ 0.77
VPS53-215	ENST00000573028	HOMER1	Q86YM7	354 aa		19.83	■□□□□ 0.77
VPS53-215	ENST00000573028	GPR108	Q9NPR9	543 aa		19.83	■□□□□ 0.77
VPS53-215	ENST00000573028	PFKFB1	P16118	471 aa		19.83	■□□□□ 0.77
VPS53-215	ENST00000573028	GSDMD	P57764	484 aa		19.83	■□□□□ 0.77
VPS53-215	ENST00000573028	STK11IP	Q8N1F8	1099 aa		19.83	■□□□□ 0.77
VPS53-215	ENST00000573028	NCOA7	Q8NI08	942 aa		19.83	■□□□□ 0.77
VPS53-215	ENST00000573028	GTPBP4	Q9BZE4	634 aa	Known RBP	19.83	■□□□□ 0.77
VPS53-215	ENST00000573028	HPS5	Q9UPZ3	1129 aa		19.83	■□□□□ 0.77
VPS53-215	ENST00000573028	FOXP2	O15409	715 aa		19.83	■□□□□ 0.76
VPS53-215	ENST00000573028	ATP1A3	P13637	1013 aa		19.83	■□□□□ 0.76
VPS53-215	ENST00000573028	TPM4	P67936	248 aa		19.83	■□□□□ 0.76
VPS53-215	ENST00000573028	ANO1	Q5XXA6	986 aa		19.83	■□□□□ 0.76
VPS53-215	ENST00000573028	C19orf44	Q9H6X5	657 aa		19.83	■□□□□ 0.76
VPS53-215	ENST00000573028	PHRF1	Q9P1Y6	1649 aa	Known RBP	19.82	■□□□□ 0.76
VPS53-215	ENST00000573028	GPAA1	O43292	621 aa		19.82	■□□□□ 0.76
VPS53-215	ENST00000573028	ANTXR2	P58335	489 aa		19.82	■□□□□ 0.76
VPS53-215	ENST00000573028	PHKB	Q93100	1093 aa		19.82	■□□□□ 0.76
VPS53-215	ENST00000573028		A0A1W2PQ27	194 aa		19.82	■□□□□ 0.76
VPS53-215	ENST00000573028		A0A1W2PQ64	194 aa		19.82	■□□□□ 0.76
VPS53-215	ENST00000573028		A0A1W2PQD8	194 aa		19.82	■□□□□ 0.76
VPS53-215	ENST00000573028	ARMCX5	Q6P1M9	558 aa		19.82	■□□□□ 0.76
VPS53-215	ENST00000573028	SYNE4	Q8N205	404 aa		19.82	■□□□□ 0.76
VPS53-215	ENST00000573028	CCDC191	Q8NCU4	936 aa		19.82	■□□□□ 0.76
VPS53-215	ENST00000573028	CHMP4C	Q96CF2	233 aa		19.82	■□□□□ 0.76
VPS53-215	ENST00000573028	TRDN	Q13061	729 aa		19.81	■□□□□ 0.76
VPS53-215	ENST00000573028	LRRFIP1	Q32MZ4	808 aa	Known RBP	19.81	■□□□□ 0.76
VPS53-215	ENST00000573028	KMT5B	Q4FZB7	885 aa		19.81	■□□□□ 0.76
VPS53-215	ENST00000573028	MICU3	Q86XE3	530 aa		19.81	■□□□□ 0.76
VPS53-215	ENST00000573028	LAMA4	Q16363	1823 aa		19.81	■□□□□ 0.76
VPS53-215	ENST00000573028	E4F1	Q66K89	784 aa	Predicted RBP	19.81	■□□□□ 0.76
VPS53-215	ENST00000573028	TOM1L2	Q6ZVM7	507 aa		19.81	■□□□□ 0.76
VPS53-215	ENST00000573028	WDHD1	O75717	1129 aa	Predicted RBP	19.81	■□□□□ 0.76

Retrieved 100 of 20,778 RNA–protein pairs in 128.4 ms