RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 CITED4Q96RK1 184 aa8.54□□□□□ -1.04
CHD9-212ENST00000564641 MEGF11A6BM72 1044 aa8.53□□□□□ -1.04
CHD9-212ENST00000564641 H3BRB1 525 aa8.53□□□□□ -1.04
CHD9-212ENST00000564641 DDX3YO15523 660 aaKnown RBP8.53□□□□□ -1.04
CHD9-212ENST00000564641 NDUFB5O43674 189 aa8.53□□□□□ -1.04
CHD9-212ENST00000564641 TRPA1O75762 1119 aa8.53□□□□□ -1.04
CHD9-212ENST00000564641 VN1R5Q7Z5H4 357 aa8.53□□□□□ -1.04
CHD9-212ENST00000564641 MYRFLQ96LU7 910 aa8.53□□□□□ -1.04
CHD9-212ENST00000564641 TUT1Q9H6E5 874 aaKnown RBP8.53□□□□□ -1.04
CHD9-212ENST00000564641 HIF3AQ9Y2N7 669 aa8.53□□□□□ -1.04
CHD9-212ENST00000564641 HYAL3O43820 417 aaPredicted RBP8.52□□□□□ -1.05
CHD9-212ENST00000564641 IGLV1-40P01703 118 aa8.52□□□□□ -1.05
CHD9-212ENST00000564641 NLRP12P59046 1061 aa8.52□□□□□ -1.05
CHD9-212ENST00000564641 PEAR1Q5VY43 1037 aaPredicted RBP8.52□□□□□ -1.05
CHD9-212ENST00000564641 FDX2Q6P4F2 183 aa8.52□□□□□ -1.05
CHD9-212ENST00000564641 ARMC10Q8N2F6 343 aa8.52□□□□□ -1.05
CHD9-212ENST00000564641 ASAP3Q8TDY4 903 aa8.52□□□□□ -1.05
CHD9-212ENST00000564641 UBASH3BQ8TF42 649 aa8.52□□□□□ -1.05
CHD9-212ENST00000564641 RUSC1Q9BVN2 902 aa8.52□□□□□ -1.05
CHD9-212ENST00000564641 SOX1O00570 391 aaPredicted RBP8.51□□□□□ -1.05
CHD9-212ENST00000564641 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.51□□□□□ -1.05
CHD9-212ENST00000564641 CLEC10AQ8IUN9 316 aa8.51□□□□□ -1.05
CHD9-212ENST00000564641 SERPINB4P48594 390 aa8.5□□□□□ -1.05
CHD9-212ENST00000564641 GALNT12Q8IXK2 581 aa8.5□□□□□ -1.05
CHD9-212ENST00000564641 ARHGAP4P98171 946 aa8.49□□□□□ -1.05
CHD9-212ENST00000564641 NFIAQ12857 509 aa8.49□□□□□ -1.05
CHD9-212ENST00000564641 NUTM2GQ5VZR2 741 aa8.49□□□□□ -1.05
CHD9-212ENST00000564641 FAM20CQ8IXL6 584 aa8.49□□□□□ -1.05
CHD9-212ENST00000564641 CCER1Q8TC90 406 aaPredicted RBP8.49□□□□□ -1.05
CHD9-212ENST00000564641 CYP4F12Q9HCS2 524 aa8.49□□□□□ -1.05
CHD9-212ENST00000564641 ESRRAP11474 423 aaPredicted RBP8.48□□□□□ -1.05
CHD9-212ENST00000564641 ECM1Q16610 540 aa8.48□□□□□ -1.05
CHD9-212ENST00000564641 RNF43Q68DV7 783 aa8.48□□□□□ -1.05
CHD9-212ENST00000564641 TXNDC2Q86VQ3 553 aa8.48□□□□□ -1.05
CHD9-212ENST00000564641 CCNJLQ8IV13 435 aa8.48□□□□□ -1.05
CHD9-212ENST00000564641 ARID3AQ99856 593 aa8.48□□□□□ -1.05
CHD9-212ENST00000564641 FAM83CQ9BQN1 747 aa8.48□□□□□ -1.05
CHD9-212ENST00000564641 C7orf69Q9H7B7 122 aa8.48□□□□□ -1.05
CHD9-212ENST00000564641 SUGCTQ9HAC7 445 aa8.48□□□□□ -1.05
CHD9-212ENST00000564641 ZFYVE1Q9HBF4 777 aa8.48□□□□□ -1.05
CHD9-212ENST00000564641 LATS2Q9NRM7 1088 aa8.48□□□□□ -1.05
CHD9-212ENST00000564641 BMP3P12645 472 aa8.47□□□□□ -1.05
CHD9-212ENST00000564641 EXOSC6Q5RKV6 272 aaKnown RBP8.47□□□□□ -1.05
CHD9-212ENST00000564641 HP1BP3Q5SSJ5 553 aaPredicted RBP8.47□□□□□ -1.05
CHD9-212ENST00000564641 SMG8Q8ND04 991 aaKnown RBP8.47□□□□□ -1.05
CHD9-212ENST00000564641 DDX54Q8TDD1 881 aaKnown RBP8.47□□□□□ -1.05
CHD9-212ENST00000564641 FAM129BQ96TA1 746 aa8.47□□□□□ -1.05
CHD9-212ENST00000564641 DBNDD2Q9BQY9 259 aa8.47□□□□□ -1.05
CHD9-212ENST00000564641 CLEC4MQ9H2X3 399 aaPredicted RBP8.47□□□□□ -1.05
CHD9-212ENST00000564641 A0A096LPE4 126 aa8.46□□□□□ -1.06
CHD9-212ENST00000564641 A0A1W2PPZ6 126 aa8.46□□□□□ -1.06
CHD9-212ENST00000564641 GAS2O43903 313 aaKnown RBP8.46□□□□□ -1.06
CHD9-212ENST00000564641 PREPP48147 710 aa8.46□□□□□ -1.06
CHD9-212ENST00000564641 KIAA0319Q5VV43 1072 aa8.46□□□□□ -1.06
CHD9-212ENST00000564641 TRIM42Q8IWZ5 723 aa8.46□□□□□ -1.06
CHD9-212ENST00000564641 RETREG2Q8NC44 543 aa8.46□□□□□ -1.06
CHD9-212ENST00000564641 USP26Q9BXU7 913 aa8.46□□□□□ -1.06
CHD9-212ENST00000564641 TMPRSS13Q9BYE2 586 aa8.46□□□□□ -1.06
CHD9-212ENST00000564641 DNAJC25Q9H1X3 360 aa8.46□□□□□ -1.06
CHD9-212ENST00000564641 KCNF1Q9H3M0 494 aa8.46□□□□□ -1.06
CHD9-212ENST00000564641 LIN7BQ9HAP6 207 aa8.46□□□□□ -1.06
CHD9-212ENST00000564641 PCMTD2Q9NV79 361 aa8.46□□□□□ -1.06
CHD9-212ENST00000564641 LOC100289279A0A1B0GTE1 492 aa8.45□□□□□ -1.06
CHD9-212ENST00000564641 A0A1W2PP55 124 aa8.45□□□□□ -1.06
CHD9-212ENST00000564641 COBLO75128 1261 aa8.45□□□□□ -1.06
CHD9-212ENST00000564641 CPNE3O75131 537 aaKnown RBP8.45□□□□□ -1.06
CHD9-212ENST00000564641 POLR3DP05423 398 aaPredicted RBP8.45□□□□□ -1.06
CHD9-212ENST00000564641 GRIK1P39086 918 aa8.45□□□□□ -1.06
CHD9-212ENST00000564641 CD97P48960 835 aa8.45□□□□□ -1.06
CHD9-212ENST00000564641 GSTM4Q03013 218 aa8.45□□□□□ -1.06
CHD9-212ENST00000564641 INTS5Q6P9B9 1019 aaKnown RBP8.45□□□□□ -1.06
CHD9-212ENST00000564641 BEND4Q6ZU67 534 aa8.45□□□□□ -1.06
CHD9-212ENST00000564641 HMX2A2RU54 273 aa8.44□□□□□ -1.06
CHD9-212ENST00000564641 CYP11A1P05108 521 aa8.44□□□□□ -1.06
CHD9-212ENST00000564641 PCDH1Q08174 1060 aa8.44□□□□□ -1.06
CHD9-212ENST00000564641 HGSNATQ68CP4 663 aa8.44□□□□□ -1.06
CHD9-212ENST00000564641 C12orf50Q8NA57 414 aaPredicted RBP8.44□□□□□ -1.06
CHD9-212ENST00000564641 GIMAP7Q8NHV1 300 aa8.44□□□□□ -1.06
CHD9-212ENST00000564641 DMRTB1Q96MA1 342 aa8.44□□□□□ -1.06
CHD9-212ENST00000564641 TCF12Q99081 682 aa8.44□□□□□ -1.06
CHD9-212ENST00000564641 METTL12A8MUP2 240 aa8.43□□□□□ -1.06
CHD9-212ENST00000564641 SUPT5HO00267 1087 aaKnown RBP8.43□□□□□ -1.06
CHD9-212ENST00000564641 TIAF1O95411 115 aa8.43□□□□□ -1.06
CHD9-212ENST00000564641 ZDHHC13Q8IUH4 622 aa8.43□□□□□ -1.06
CHD9-212ENST00000564641 TMC1Q8TDI8 760 aa8.43□□□□□ -1.06
CHD9-212ENST00000564641 PTPN12Q05209 780 aaKnown RBP8.42□□□□□ -1.06
CHD9-212ENST00000564641 EHD4Q9H223 541 aa8.42□□□□□ -1.06
CHD9-212ENST00000564641 KIAA1324LA8MWY0 1029 aaPredicted RBP8.41□□□□□ -1.06
CHD9-212ENST00000564641 MAP4P27816 1152 aaKnown RBP8.41□□□□□ -1.06
CHD9-212ENST00000564641 SSTR4P31391 388 aa8.41□□□□□ -1.06
CHD9-212ENST00000564641 GRIA4P48058 902 aa8.41□□□□□ -1.06
CHD9-212ENST00000564641 ALKBH8Q96BT7 664 aaKnown RBP8.41□□□□□ -1.06
CHD9-212ENST00000564641 YIPF2Q9BWQ6 316 aa8.41□□□□□ -1.06
CHD9-212ENST00000564641 RBCK1Q9BYM8 510 aa8.41□□□□□ -1.06
CHD9-212ENST00000564641 TGFB1P01137 390 aa8.4□□□□□ -1.06
CHD9-212ENST00000564641 ITPKAP23677 461 aa8.4□□□□□ -1.06
CHD9-212ENST00000564641 USP11P51784 963 aa8.4□□□□□ -1.06
CHD9-212ENST00000564641 ORC1Q13415 861 aa8.4□□□□□ -1.06
CHD9-212ENST00000564641 CPSF6Q16630 551 aaKnown RBP eCLIP8.4□□□□□ -1.06
CHD9-212ENST00000564641 NRSN2Q9GZP1 204 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms