RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 AEBP2Q6ZN18 517 aaPredicted RBP28.48■■■□□ 2.15
CHD9-212ENST00000564641 CHIC1Q5VXU3 224 aa27.49■■□□□ 1.99
CHD9-212ENST00000564641 SENP3Q9H4L4 574 aaPredicted RBP24.4■■□□□ 1.5
CHD9-212ENST00000564641 PHF23Q9BUL5 403 aaPredicted RBP24.06■■□□□ 1.44
CHD9-212ENST00000564641 FOXD1Q16676 465 aa22.58■■□□□ 1.21
CHD9-212ENST00000564641 PLPPR3Q6T4P5 718 aa22.2■■□□□ 1.14
CHD9-212ENST00000564641 PPP6R1Q9UPN7 881 aa21.34■■□□□ 1.01
CHD9-212ENST00000564641 ADRA2BP18089 450 aa21.31■■□□□ 1
CHD9-212ENST00000564641 PIAS4Q8N2W9 510 aaPredicted RBP21.24■□□□□ 0.99
CHD9-212ENST00000564641 MSH5O43196 834 aa21.14■□□□□ 0.97
CHD9-212ENST00000564641 POTEDQ86YR6 584 aa19.88■□□□□ 0.77
CHD9-212ENST00000564641 SCAF1Q9H7N4 1312 aaKnown RBP19.72■□□□□ 0.75
CHD9-212ENST00000564641 PPP4R3CPQ6ZMV5 832 aa19.44■□□□□ 0.7
CHD9-212ENST00000564641 MAPK8IP2Q13387 824 aaPredicted RBP19.43■□□□□ 0.7
CHD9-212ENST00000564641 DMRT2Q9Y5R5 561 aa19.37■□□□□ 0.69
CHD9-212ENST00000564641 CNKSR2Q8WXI2 1034 aa19.05■□□□□ 0.64
CHD9-212ENST00000564641 NCBP3Q53F19 620 aaKnown RBP18.92■□□□□ 0.62
CHD9-212ENST00000564641 HOXD11P31277 338 aaPredicted RBP18.81■□□□□ 0.6
CHD9-212ENST00000564641 RNF216Q9NWF9 866 aaPredicted RBP18.79■□□□□ 0.6
CHD9-212ENST00000564641 DCAF8L1A6NGE4 600 aa18.52■□□□□ 0.56
CHD9-212ENST00000564641 NPM3O75607 178 aaKnown RBP18.51■□□□□ 0.55
CHD9-212ENST00000564641 KCNA4P22459 653 aa18.44■□□□□ 0.54
CHD9-212ENST00000564641 DNAJC5BQ9UF47 199 aa18.21■□□□□ 0.51
CHD9-212ENST00000564641 RNF39Q9H2S5 420 aa18.01■□□□□ 0.47
CHD9-212ENST00000564641 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.93■□□□□ 0.46
CHD9-212ENST00000564641 CACNB1Q02641 598 aaPredicted RBP17.85■□□□□ 0.45
CHD9-212ENST00000564641 C1QBPQ07021 282 aaKnown RBP17.83■□□□□ 0.44
CHD9-212ENST00000564641 SLC4A2P04920 1241 aa17.55■□□□□ 0.4
CHD9-212ENST00000564641 SLC4A1APQ9BWU0 796 aaKnown RBP17.55■□□□□ 0.4
CHD9-212ENST00000564641 U3KPZ7 1027 aaPredicted RBP17.53■□□□□ 0.4
CHD9-212ENST00000564641 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.34■□□□□ 0.37
CHD9-212ENST00000564641 HNRNPUL2Q1KMD3 747 aaKnown RBP17.34■□□□□ 0.37
CHD9-212ENST00000564641 APLP2Q06481 763 aa17.29■□□□□ 0.36
CHD9-212ENST00000564641 SAMD1Q6SPF0 538 aaPredicted RBP17.21■□□□□ 0.35
CHD9-212ENST00000564641 MYCNP04198 464 aaPredicted RBP17.19■□□□□ 0.34
CHD9-212ENST00000564641 FOXD4L1Q9NU39 408 aa17.18■□□□□ 0.34
CHD9-212ENST00000564641 CAPN15O75808 1086 aa17.15■□□□□ 0.34
CHD9-212ENST00000564641 SPINK5Q9NQ38 1064 aaPredicted RBP17.13■□□□□ 0.33
CHD9-212ENST00000564641 ZNF219Q9P2Y4 722 aaPredicted RBP17.04■□□□□ 0.32
CHD9-212ENST00000564641 TRHP20396 242 aaPredicted RBP16.95■□□□□ 0.3
CHD9-212ENST00000564641 DSG3P32926 999 aa16.95■□□□□ 0.3
CHD9-212ENST00000564641 ZBTB22O15209 634 aa16.92■□□□□ 0.3
CHD9-212ENST00000564641 ABCB7O75027 752 aa16.72■□□□□ 0.27
CHD9-212ENST00000564641 ATXN8OSP0DMR3 200 aa16.71■□□□□ 0.27
CHD9-212ENST00000564641 ATF5Q9Y2D1 282 aaPredicted RBP16.61■□□□□ 0.25
CHD9-212ENST00000564641 POLA2Q14181 598 aa16.59■□□□□ 0.25
CHD9-212ENST00000564641 CSRNP3Q8WYN3 585 aa16.5■□□□□ 0.23
CHD9-212ENST00000564641 EHMT2Q96KQ7 1210 aa16.47■□□□□ 0.23
CHD9-212ENST00000564641 ZBTB12Q9Y330 459 aaPredicted RBP16.42■□□□□ 0.22
CHD9-212ENST00000564641 RBM42Q9BTD8 480 aaKnown RBP16.29■□□□□ 0.2
CHD9-212ENST00000564641 FBLN2P98095 1184 aa16.12■□□□□ 0.17
CHD9-212ENST00000564641 OSCARQ8IYS5 282 aa16.01■□□□□ 0.15
CHD9-212ENST00000564641 AKT1S1Q96B36 256 aa15.95■□□□□ 0.14
CHD9-212ENST00000564641 MKRN4PQ13434 485 aaPredicted RBP15.9■□□□□ 0.14
CHD9-212ENST00000564641 SPDYE2BA6NHP3 402 aa15.88■□□□□ 0.13
CHD9-212ENST00000564641 SPDYE6P0CI01 402 aa15.88■□□□□ 0.13
CHD9-212ENST00000564641 SPDYE2Q495Y8 402 aa15.88■□□□□ 0.13
CHD9-212ENST00000564641 REM2Q8IYK8 340 aaPredicted RBP15.74■□□□□ 0.11
CHD9-212ENST00000564641 ZNF692Q9BU19 519 aaPredicted RBP15.71■□□□□ 0.11
CHD9-212ENST00000564641 CHRDL2Q6WN34 429 aa15.7■□□□□ 0.1
CHD9-212ENST00000564641 POTEHQ6S545 545 aa15.69■□□□□ 0.1
CHD9-212ENST00000564641 SSUH2Q9Y2M2 353 aa15.66■□□□□ 0.1
CHD9-212ENST00000564641 PITPNM1O00562 1244 aa15.54■□□□□ 0.08
CHD9-212ENST00000564641 SPDYE1Q8NFV5 336 aaPredicted RBP15.52■□□□□ 0.08
CHD9-212ENST00000564641 PABPN1Q86U42 306 aaKnown RBP eCLIP15.46■□□□□ 0.07
CHD9-212ENST00000564641 SPDYE4A6NLX3 237 aa15.42■□□□□ 0.06
CHD9-212ENST00000564641 CLEC11AQ9Y240 323 aa15.4■□□□□ 0.06
CHD9-212ENST00000564641 FXR2P51116 673 aaKnown RBP eCLIP15.37■□□□□ 0.05
CHD9-212ENST00000564641 PIP4P2Q8N4L2 257 aa15.37■□□□□ 0.05
CHD9-212ENST00000564641 PRR29P0C7W0 189 aa15.24■□□□□ 0.03
CHD9-212ENST00000564641 STAG3Q9UJ98 1225 aa15.24■□□□□ 0.03
CHD9-212ENST00000564641 PRKAR2AP13861 404 aaKnown RBP15.16■□□□□ 0.02
CHD9-212ENST00000564641 PROM2Q8N271 834 aa15.1■□□□□ 0.01
CHD9-212ENST00000564641 HAX1O00165 279 aa15.03■□□□□ -0
CHD9-212ENST00000564641 CHADLQ6NUI6 762 aa15□□□□□ -0.01
CHD9-212ENST00000564641 FKBP8Q14318 412 aa14.97□□□□□ -0.01
CHD9-212ENST00000564641 SP7Q8TDD2 431 aaPredicted RBP14.9□□□□□ -0.02
CHD9-212ENST00000564641 FARP1Q9Y4F1 1045 aaPredicted RBP14.9□□□□□ -0.02
CHD9-212ENST00000564641 CREBZFQ9NS37 354 aa14.88□□□□□ -0.03
CHD9-212ENST00000564641 C19orf67A6NJJ6 358 aa14.86□□□□□ -0.03
CHD9-212ENST00000564641 PLEKHG5O94827 1062 aa14.76□□□□□ -0.05
CHD9-212ENST00000564641 NPM1P06748 294 aaKnown RBP eCLIP14.75□□□□□ -0.05
CHD9-212ENST00000564641 EVX2Q03828 476 aa14.74□□□□□ -0.05
CHD9-212ENST00000564641 CD44P16070 742 aaKnown RBP14.72□□□□□ -0.05
CHD9-212ENST00000564641 FBXO3Q9UK99 471 aa14.71□□□□□ -0.05
CHD9-212ENST00000564641 MIER1Q8N108 512 aa14.68□□□□□ -0.06
CHD9-212ENST00000564641 MNX1P50219 401 aaPredicted RBP14.67□□□□□ -0.06
CHD9-212ENST00000564641 CLCN6P51797 869 aa14.64□□□□□ -0.07
CHD9-212ENST00000564641 PAK3O75914 559 aaPredicted RBP14.62□□□□□ -0.07
CHD9-212ENST00000564641 PLCD3Q8N3E9 789 aa14.62□□□□□ -0.07
CHD9-212ENST00000564641 ZBTB47Q9UFB7 747 aaPredicted RBP14.6□□□□□ -0.07
CHD9-212ENST00000564641 ZRANB1Q9UGI0 708 aa14.56□□□□□ -0.08
CHD9-212ENST00000564641 GABBR2O75899 941 aa14.53□□□□□ -0.08
CHD9-212ENST00000564641 ZNF579Q8NAF0 562 aaKnown RBP14.53□□□□□ -0.08
CHD9-212ENST00000564641 VASPP50552 380 aaPredicted RBP14.41□□□□□ -0.1
CHD9-212ENST00000564641 TSPYL2Q9H2G4 693 aaPredicted RBP14.37□□□□□ -0.11
CHD9-212ENST00000564641 RASEFQ8IZ41 740 aa14.33□□□□□ -0.12
CHD9-212ENST00000564641 PHF12Q96QT6 1004 aa14.33□□□□□ -0.12
CHD9-212ENST00000564641 NUBP1P53384 320 aa14.31□□□□□ -0.12
CHD9-212ENST00000564641 CCDC61Q9Y6R9 512 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms