RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PLCH1Q4KWH8 1693 aa12.54□□□□□ -0.4
CUX1-217ENST00000558836 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.54□□□□□ -0.4
CUX1-217ENST00000558836 PTPDC1A2A3K4 754 aa12.54□□□□□ -0.4
CUX1-217ENST00000558836 ZFYP08048 801 aaPredicted RBP12.54□□□□□ -0.4
CUX1-217ENST00000558836 PDIA3P30101 505 aaKnown RBP12.54□□□□□ -0.4
CUX1-217ENST00000558836 ADD2P35612 726 aa12.54□□□□□ -0.4
CUX1-217ENST00000558836 PUM3Q15397 648 aaKnown RBP12.54□□□□□ -0.4
CUX1-217ENST00000558836 CCDC183Q5T5S1 534 aa12.54□□□□□ -0.4
CUX1-217ENST00000558836 ZNF213O14771 459 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 PHLPP1O60346 1717 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 PFKFB2O60825 505 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 LIG1P18858 919 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 RASGRF1Q13972 1273 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 OTUD7BQ6GQQ9 843 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 LINC00116Q8NCU8 138 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 RXRAP19793 462 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 LRRFIP1Q32MZ4 808 aaKnown RBP12.53□□□□□ -0.4
CUX1-217ENST00000558836 LPIN2Q92539 896 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 SPATA32Q96LK8 384 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 PPP1R9BQ96SB3 815 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.53□□□□□ -0.48e-7■■■□□ 15.1
CUX1-217ENST00000558836 GJB4Q9NTQ9 266 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 MYH3P11055 1940 aa12.53□□□□□ -0.4
CUX1-217ENST00000558836 AKAP11Q9UKA4 1901 aa12.52□□□□□ -0.4
CUX1-217ENST00000558836 PRC1O43663 620 aa12.52□□□□□ -0.4
CUX1-217ENST00000558836 PDE6AP16499 860 aa12.52□□□□□ -0.4
CUX1-217ENST00000558836 MAGEB6Q8N7X4 407 aa12.52□□□□□ -0.4
CUX1-217ENST00000558836 UBAP1LF5GYI3 381 aa12.52□□□□□ -0.41
CUX1-217ENST00000558836 NTSR2O95665 410 aa12.52□□□□□ -0.41
CUX1-217ENST00000558836 ERFEQ4G0M1 354 aa12.52□□□□□ -0.41
CUX1-217ENST00000558836 SPATA5Q8NB90 893 aa12.52□□□□□ -0.41
CUX1-217ENST00000558836 NBPF3Q9H094 633 aa12.52□□□□□ -0.41
CUX1-217ENST00000558836 TOM1O60784 492 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 FGFR2P21802 821 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 PLCB2Q00722 1185 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 CTNNA3Q9UI47 895 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 COL22A1Q8NFW1 1626 aaPredicted RBP12.51□□□□□ -0.41
CUX1-217ENST00000558836 GOLGA6L4A6NEF3 574 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 ANTXR2P58335 489 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 PDE4CQ08493 712 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 CCDC152Q4G0S7 254 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 TBC1D10CQ8IV04 446 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 LTBP4Q8N2S1 1624 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 MROH5Q6ZUA9 1318 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 KLF18A0A0U1RQI7 1052 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 PRKAB2O43741 272 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 PHF14O94880 888 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 GTF2E1P29083 439 aaPredicted RBP12.51□□□□□ -0.41
CUX1-217ENST00000558836 IGHMBP2P38935 993 aaKnown RBP12.51□□□□□ -0.41
CUX1-217ENST00000558836 RALYLQ86SE5 291 aaKnown RBP12.51□□□□□ -0.41
CUX1-217ENST00000558836 CCDC144CPQ8IYA2 1237 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 CKAP2LQ8IYA6 745 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 LEO1Q8WVC0 666 aaPredicted RBP12.51□□□□□ -0.41
CUX1-217ENST00000558836 AIDAQ96BJ3 306 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 SENP2Q9HC62 589 aa12.51□□□□□ -0.41
CUX1-217ENST00000558836 ANKRD36CQ5JPF3 1778 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 SLC5A1P13866 664 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 CHRNDQ07001 517 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 RESTQ13127 1097 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 MIGA1Q8NAN2 632 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 SMARCC2Q8TAQ2 1214 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 AGXT2Q9BYV1 514 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 ARMT1Q9H993 441 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 SRP68Q9UHB9 627 aaKnown RBP12.5□□□□□ -0.41
CUX1-217ENST00000558836 ARID4AP29374 1257 aaPredicted RBP12.5□□□□□ -0.41
CUX1-217ENST00000558836 MCM5P33992 734 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 CSPP1Q1MSJ5 1256 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 BARGINQ6ZT62 677 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 PGBD1Q96JS3 809 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 NWD2Q9ULI1 1742 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 TAF1P21675 1872 aa12.5□□□□□ -0.41
CUX1-217ENST00000558836 GOLGA8BA8MQT2 603 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 FDPSP14324 419 aaKnown RBP12.49□□□□□ -0.41
CUX1-217ENST00000558836 GYG1P46976 350 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 TTF1Q15361 905 aaPredicted RBP12.49□□□□□ -0.41
CUX1-217ENST00000558836 MB21D2Q8IYB1 491 aaPredicted RBP12.49□□□□□ -0.41
CUX1-217ENST00000558836 NCOA7Q8NI08 942 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 DACT1Q9NYF0 836 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 COL4A1P02462 1669 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 TCRBV5S4A2TA0A5A2 114 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 B4E1Z4 1266 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 MBD4O95243 580 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 CTDSPL2Q05D32 466 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 PARP10Q53GL7 1025 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 ZSCAN25Q6NSZ9 544 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 CYB5R4Q7L1T6 521 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 AMIGO3Q86WK7 504 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 ABCF2Q9UG63 623 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 USP25Q9UHP3 1055 aa12.49□□□□□ -0.41
CUX1-217ENST00000558836 TBC1D9BQ66K14 1250 aa12.48□□□□□ -0.41
CUX1-217ENST00000558836 BICD2Q8TD16 824 aa12.48□□□□□ -0.41
CUX1-217ENST00000558836 STRBPQ96SI9 672 aaKnown RBP12.48□□□□□ -0.41
CUX1-217ENST00000558836 NR1I2O75469 434 aa12.48□□□□□ -0.41
CUX1-217ENST00000558836 UQCRFS1P1P0C7P4 283 aa12.48□□□□□ -0.41
CUX1-217ENST00000558836 UBE3CQ15386 1083 aa12.48□□□□□ -0.41
CUX1-217ENST00000558836 MYL10Q9BUA6 226 aa12.48□□□□□ -0.41
CUX1-217ENST00000558836 SCAND2PQ9GZW5 306 aaPredicted RBP12.48□□□□□ -0.41
CUX1-217ENST00000558836 HPS5Q9UPZ3 1129 aa12.48□□□□□ -0.41
CUX1-217ENST00000558836 WNK3Q9BYP7 1800 aa12.48□□□□□ -0.41
CUX1-217ENST00000558836 SMIM22K7EJ46 135 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms