RNA–Protein interactions for RNA: ENST00000558790.5

SPG11-212, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 858 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-212ENST00000558790 CNTROBQ8N137 903 aa12.82□□□□□ -0.36
SPG11-212ENST00000558790 IBTKQ9P2D0 1353 aaPredicted RBP12.81□□□□□ -0.36
SPG11-212ENST00000558790 FZD9O00144 591 aa12.81□□□□□ -0.36
SPG11-212ENST00000558790 RFC5P40937 340 aa12.81□□□□□ -0.36
SPG11-212ENST00000558790 NYAP1Q6ZVC0 841 aa12.81□□□□□ -0.36
SPG11-212ENST00000558790 SCUBE3Q8IX30 993 aa12.81□□□□□ -0.36
SPG11-212ENST00000558790 SYNE4Q8N205 404 aa12.81□□□□□ -0.36
SPG11-212ENST00000558790 ZBTB3Q9H5J0 574 aa12.81□□□□□ -0.36
SPG11-212ENST00000558790 MIS18AQ9NYP9 233 aa12.81□□□□□ -0.36
SPG11-212ENST00000558790 UBN2Q6ZU65 1347 aa12.81□□□□□ -0.36
SPG11-212ENST00000558790 HTATSF1O43719 755 aaKnown RBP12.8□□□□□ -0.36
SPG11-212ENST00000558790 ALDH1B1P30837 517 aa12.8□□□□□ -0.36
SPG11-212ENST00000558790 MMRN1Q13201 1228 aa12.8□□□□□ -0.36
SPG11-212ENST00000558790 TAF7Q15545 349 aaPredicted RBP12.8□□□□□ -0.36
SPG11-212ENST00000558790 GPC2Q8N158 579 aa12.8□□□□□ -0.36
SPG11-212ENST00000558790 PSMD1Q99460 953 aa12.8□□□□□ -0.36
SPG11-212ENST00000558790 MTRQ99707 1265 aa12.8□□□□□ -0.36
SPG11-212ENST00000558790 MAP3K15Q6ZN16 1313 aa12.8□□□□□ -0.36
SPG11-212ENST00000558790 LRRC37AA6NMS7 1700 aa12.79□□□□□ -0.36
SPG11-212ENST00000558790 DDX60Q8IY21 1712 aaKnown RBP12.79□□□□□ -0.36
SPG11-212ENST00000558790 NR1I2O75469 434 aa12.79□□□□□ -0.36
SPG11-212ENST00000558790 GTF2E1P29083 439 aaPredicted RBP12.79□□□□□ -0.36
SPG11-212ENST00000558790 MTMR2Q13614 643 aa12.79□□□□□ -0.36
SPG11-212ENST00000558790 NGEFQ8N5V2 710 aa12.79□□□□□ -0.36
SPG11-212ENST00000558790 NYXQ9GZU5 481 aa12.79□□□□□ -0.36
SPG11-212ENST00000558790 DDX21Q9NR30 783 aaKnown RBP eCLIP12.79□□□□□ -0.36
SPG11-212ENST00000558790 GPTP24298 496 aa12.78□□□□□ -0.36
SPG11-212ENST00000558790 PPP2R2DQ66LE6 453 aa12.78□□□□□ -0.36
SPG11-212ENST00000558790 KIF6Q6ZMV9 814 aa12.78□□□□□ -0.36
SPG11-212ENST00000558790 TTLL7Q6ZT98 887 aa12.78□□□□□ -0.36
SPG11-212ENST00000558790 PNMA8AQ86V59 439 aaPredicted RBP12.78□□□□□ -0.36
SPG11-212ENST00000558790 HCSTQ9UBK5 93 aa12.78□□□□□ -0.36
SPG11-212ENST00000558790 POLR2AP24928 1970 aaKnown RBP12.78□□□□□ -0.36
SPG11-212ENST00000558790 COL6A3P12111 3177 aa12.77□□□□□ -0.36
SPG11-212ENST00000558790 CUL9Q8IWT3 2517 aa12.77□□□□□ -0.37
SPG11-212ENST00000558790 ERVV-1B6SEH8 477 aa12.77□□□□□ -0.37
SPG11-212ENST00000558790 TLL1O43897 1013 aa12.77□□□□□ -0.37
SPG11-212ENST00000558790 CST9Q5W186 159 aa12.77□□□□□ -0.37
SPG11-212ENST00000558790 JDP2Q8WYK2 163 aa12.77□□□□□ -0.37
SPG11-212ENST00000558790 ZNF516Q92618 1163 aa12.77□□□□□ -0.37
SPG11-212ENST00000558790 RPGRQ92834 1020 aaKnown RBP12.77□□□□□ -0.37
SPG11-212ENST00000558790 THUMPD2Q9BTF0 503 aaKnown RBP12.77□□□□□ -0.37
SPG11-212ENST00000558790 GJA3Q9Y6H8 435 aa12.77□□□□□ -0.37
SPG11-212ENST00000558790 TRAF5O00463 557 aa12.76□□□□□ -0.37
SPG11-212ENST00000558790 PPEF1O14829 653 aaPredicted RBP12.76□□□□□ -0.37
SPG11-212ENST00000558790 NTSR2O95665 410 aa12.76□□□□□ -0.37
SPG11-212ENST00000558790 MYL6BP14649 208 aa12.76□□□□□ -0.37
SPG11-212ENST00000558790 HOXA10P31260 410 aaPredicted RBP12.76□□□□□ -0.37
SPG11-212ENST00000558790 SCNN1DP51172 638 aa12.76□□□□□ -0.37
SPG11-212ENST00000558790 Q3C1V9 767 aa12.76□□□□□ -0.37
SPG11-212ENST00000558790 TJAP1Q5JTD0 557 aa12.76□□□□□ -0.37
SPG11-212ENST00000558790 TSC1Q92574 1164 aa12.76□□□□□ -0.37
SPG11-212ENST00000558790 ZIC5Q96T25 663 aa12.76□□□□□ -0.37
SPG11-212ENST00000558790 RRP7AQ9Y3A4 280 aaKnown RBP12.76□□□□□ -0.37
SPG11-212ENST00000558790 DUOX1Q9NRD9 1551 aa12.76□□□□□ -0.37
SPG11-212ENST00000558790 CFAP99D6REC4 459 aa12.75□□□□□ -0.37
SPG11-212ENST00000558790 LMOD1P29536 600 aaPredicted RBP12.75□□□□□ -0.37
SPG11-212ENST00000558790 CENPFP49454 3210 aa12.75□□□□□ -0.37
SPG11-212ENST00000558790 EIF6P56537 245 aaKnown RBP12.75□□□□□ -0.37
SPG11-212ENST00000558790 EIF4A1P60842 406 aaKnown RBP12.75□□□□□ -0.37
SPG11-212ENST00000558790 HABP4Q5JVS0 413 aaKnown RBP12.75□□□□□ -0.37
SPG11-212ENST00000558790 SUSD4Q5VX71 490 aa12.75□□□□□ -0.37
SPG11-212ENST00000558790 CC2D2BQ6DHV5 1058 aa12.75□□□□□ -0.37
SPG11-212ENST00000558790 BRICD5Q6PL45 260 aa12.75□□□□□ -0.37
SPG11-212ENST00000558790 LARGE2Q8N3Y3 721 aa12.75□□□□□ -0.37
SPG11-212ENST00000558790 THAP11Q96EK4 314 aa12.75□□□□□ -0.37
SPG11-212ENST00000558790 EPS15P42566 896 aa12.74□□□□□ -0.37
SPG11-212ENST00000558790 ECE1P42892 770 aa12.74□□□□□ -0.37
SPG11-212ENST00000558790 PNISRQ8TF01 805 aaKnown RBP12.74□□□□□ -0.37
SPG11-212ENST00000558790 PLEKHF1Q96S99 279 aa12.74□□□□□ -0.37
SPG11-212ENST00000558790 HTTP42858 3142 aa12.73□□□□□ -0.37
SPG11-212ENST00000558790 TCERG1O14776 1098 aaKnown RBP12.73□□□□□ -0.37
SPG11-212ENST00000558790 FMNL1O95466 1100 aaPredicted RBP12.73□□□□□ -0.37
SPG11-212ENST00000558790 NFE2L2Q16236 605 aa12.73□□□□□ -0.37
SPG11-212ENST00000558790 CIAPIN1Q6FI81 312 aa12.73□□□□□ -0.37
SPG11-212ENST00000558790 ZNF34Q8IZ26 560 aa12.73□□□□□ -0.37
SPG11-212ENST00000558790 PRR7Q8TB68 274 aa12.73□□□□□ -0.37
SPG11-212ENST00000558790 CRAMP1Q96RY5 1269 aa12.73□□□□□ -0.37
SPG11-212ENST00000558790 TLL2Q9Y6L7 1015 aa12.73□□□□□ -0.37
SPG11-212ENST00000558790 ABCC4O15439 1325 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 ERBB4Q15303 1308 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 BRCA2P51587 3418 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 PPIP5K2O43314 1243 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 AP1G2O75843 785 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 NEFMP07197 916 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 AOC3Q16853 763 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 LRP10Q7Z4F1 713 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 RETREG3Q86VR2 466 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 NIM1KQ8IY84 436 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 RBM17Q96I25 401 aaKnown RBP12.72□□□□□ -0.37
SPG11-212ENST00000558790 IL21Q9HBE4 155 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 COL4A1P02462 1669 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 PSME4Q14997 1843 aa12.72□□□□□ -0.37
SPG11-212ENST00000558790 SCN9AQ15858 1988 aa12.71□□□□□ -0.37
SPG11-212ENST00000558790 MAP2K2P36507 400 aa12.71□□□□□ -0.37
SPG11-212ENST00000558790 USB1Q9BQ65 265 aaKnown RBP12.71□□□□□ -0.37
SPG11-212ENST00000558790 AKAP11Q9UKA4 1901 aa12.7□□□□□ -0.38
SPG11-212ENST00000558790 MAPK8IP3Q9UPT6 1336 aa12.7□□□□□ -0.38
SPG11-212ENST00000558790 SPDYE5A6NIY4 337 aa12.7□□□□□ -0.38
SPG11-212ENST00000558790 PROSER3Q2NL68 480 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms