RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 HTATIP2Q9BUP3 242 aa6.31□□□□□ -1.4
LIMS1-214ENST00000542845 MXD3Q9BW11 206 aa6.31□□□□□ -1.4
LIMS1-214ENST00000542845 SLC24A3Q9HC58 644 aa6.31□□□□□ -1.4
LIMS1-214ENST00000542845 STAP2Q9UGK3 403 aa6.31□□□□□ -1.4
LIMS1-214ENST00000542845 SH3TC1Q8TE82 1336 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 USP17L3A6NCW0 530 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 USP17L4A6NCW7 530 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 WNT10BO00744 389 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 MAP3K13O43283 966 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 HSPA5P11021 654 aaKnown RBP6.3□□□□□ -1.4
LIMS1-214ENST00000542845 TIE1P35590 1138 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 MTFR1Q15390 333 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 LDLRAD1Q5T700 205 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 ANKRD13DQ6ZTN6 518 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 USP17L1Q7RTZ2 530 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 FAM89AQ96GI7 184 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 WNK4Q96J92 1243 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 BIN2Q9UBW5 565 aaPredicted RBP6.3□□□□□ -1.4
LIMS1-214ENST00000542845 GGA1Q9UJY5 639 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 ZNF609O15014 1411 aa6.3□□□□□ -1.4
LIMS1-214ENST00000542845 CENPFP49454 3210 aa6.29□□□□□ -1.4
LIMS1-214ENST00000542845 LRRC37AA6NMS7 1700 aa6.29□□□□□ -1.4
LIMS1-214ENST00000542845 PPP1R12BO60237 982 aaPredicted RBP6.29□□□□□ -1.4
LIMS1-214ENST00000542845 EVI5O60447 810 aa6.29□□□□□ -1.4
LIMS1-214ENST00000542845 U2AF1L5P0DN76 240 aaPredicted RBP6.29□□□□□ -1.4
LIMS1-214ENST00000542845 ZBTB48P10074 688 aaPredicted RBP6.29□□□□□ -1.4
LIMS1-214ENST00000542845 EIF4A1P60842 406 aaKnown RBP6.29□□□□□ -1.4
LIMS1-214ENST00000542845 RPS8P62241 208 aaKnown RBP6.29□□□□□ -1.4
LIMS1-214ENST00000542845 EIF4G2P78344 907 aaKnown RBP eCLIP6.29□□□□□ -1.4
LIMS1-214ENST00000542845 U2AF1Q01081 240 aaKnown RBP eCLIP6.29□□□□□ -1.4
LIMS1-214ENST00000542845 KIF22Q14807 665 aa6.29□□□□□ -1.4
LIMS1-214ENST00000542845 TAF1CQ15572 869 aaPredicted RBP6.29□□□□□ -1.4
LIMS1-214ENST00000542845 COPS6Q7L5N1 327 aa6.29□□□□□ -1.4
LIMS1-214ENST00000542845 SLAIN1Q8ND83 568 aa6.29□□□□□ -1.4
LIMS1-214ENST00000542845 FBXO22Q8NEZ5 403 aa6.29□□□□□ -1.4
LIMS1-214ENST00000542845 PTPN18Q99952 460 aa6.29□□□□□ -1.4
LIMS1-214ENST00000542845 ARHGAP39Q9C0H5 1083 aa6.29□□□□□ -1.4
LIMS1-214ENST00000542845 RSPH6AQ9H0K4 717 aa6.29□□□□□ -1.4
LIMS1-214ENST00000542845 ZSWIM8A7E2V4 1837 aa6.29□□□□□ -1.4
LIMS1-214ENST00000542845 KDM3BQ7LBC6 1761 aa6.29□□□□□ -1.4
LIMS1-214ENST00000542845 TESPA1A2RU30 521 aaPredicted RBP6.28□□□□□ -1.4
LIMS1-214ENST00000542845 ZBTB7BO15156 539 aaPredicted RBP6.28□□□□□ -1.4
LIMS1-214ENST00000542845 PDE4AP27815 886 aa6.28□□□□□ -1.4
LIMS1-214ENST00000542845 PROSER3Q2NL68 480 aa6.28□□□□□ -1.4
LIMS1-214ENST00000542845 HSP90AB3PQ58FF7 597 aa6.28□□□□□ -1.4
LIMS1-214ENST00000542845 APOBEC3FQ8IUX4 373 aaKnown RBP6.28□□□□□ -1.4
LIMS1-214ENST00000542845 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.28□□□□□ -1.4
LIMS1-214ENST00000542845 PNISRQ8TF01 805 aaKnown RBP6.28□□□□□ -1.4
LIMS1-214ENST00000542845 XAGE3Q8WTP9 111 aa6.28□□□□□ -1.4
LIMS1-214ENST00000542845 DDX27Q96GQ7 796 aaKnown RBP6.28□□□□□ -1.4
LIMS1-214ENST00000542845 CCDC85AQ96PX6 553 aaPredicted RBP6.28□□□□□ -1.4
LIMS1-214ENST00000542845 GMLQ99445 158 aa6.28□□□□□ -1.4
LIMS1-214ENST00000542845 PRO3102Q9H379 93 aa6.28□□□□□ -1.4
LIMS1-214ENST00000542845 ELP3Q9H9T3 547 aa6.28□□□□□ -1.4
LIMS1-214ENST00000542845 ZFYVE28Q9HCC9 887 aa6.28□□□□□ -1.4
LIMS1-214ENST00000542845 SEC31BQ9NQW1 1179 aa6.28□□□□□ -1.4
LIMS1-214ENST00000542845 COL6A3P12111 3177 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 COL4A1P02462 1669 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 TTLL13PA6NNM8 815 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 ATP5J2-PTCD1G3V325 749 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 GJA5P36382 358 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 KIAA0825Q8IV33 1275 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 NKX2-3Q8TAU0 364 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 SHISA4Q96DD7 197 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 CFAP53Q96M91 514 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 RNF208Q9H0X6 261 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 DEFB129Q9H1M3 183 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 PRDM6Q9NQX0 595 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 NUDCQ9Y266 331 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 STXBP5LQ9Y2K9 1186 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 CEP290O15078 2479 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 BRCA2P51587 3418 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 PSME4Q14997 1843 aa6.27□□□□□ -1.41
LIMS1-214ENST00000542845 CCL15-CCL14A0A0B4J2E2 113 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 A0A1W2PPC1 479 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 IRS4O14654 1257 aaPredicted RBP6.26□□□□□ -1.41
LIMS1-214ENST00000542845 HTATSF1O43719 755 aaKnown RBP6.26□□□□□ -1.41
LIMS1-214ENST00000542845 WDHD1O75717 1129 aaPredicted RBP6.26□□□□□ -1.41
LIMS1-214ENST00000542845 TFRCP02786 760 aaKnown RBP6.26□□□□□ -1.41
LIMS1-214ENST00000542845 NEFMP07197 916 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 CCL5P13501 91 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 COL9A1P20849 921 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 IREB2P48200 963 aaKnown RBP6.26□□□□□ -1.41
LIMS1-214ENST00000542845 BCAMP50895 628 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 PDIA6Q15084 440 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 SF3B3Q15393 1217 aaKnown RBP6.26□□□□□ -1.41
LIMS1-214ENST00000542845 CCL15Q16663 113 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 NBPF12Q5TAG4 269 aaPredicted RBP6.26□□□□□ -1.41
LIMS1-214ENST00000542845 PODNQ7Z5L7 613 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 RAET1EQ8TD07 263 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 OPTNQ96CV9 577 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 FAM161BQ96MY7 647 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 VEZTQ9HBM0 779 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 MTMR10Q9NXD2 777 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 PODXL2Q9NZ53 605 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 RAPGEFL1Q9UHV5 662 aa6.26□□□□□ -1.41
LIMS1-214ENST00000542845 DLG5Q8TDM6 1919 aa6.25□□□□□ -1.41
LIMS1-214ENST00000542845 CLRN2A0PK11 232 aa6.25□□□□□ -1.41
LIMS1-214ENST00000542845 F8W031 263 aaPredicted RBP6.25□□□□□ -1.41
LIMS1-214ENST00000542845 USP2O75604 605 aaPredicted RBP6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms