RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 SLC51AQ86UW1 340 aa19.87■□□□□ 0.77
USP28-208ENST00000540438 ZNF532Q9HCE3 1301 aa19.87■□□□□ 0.77
USP28-208ENST00000540438 PFKFB2O60825 505 aa19.87■□□□□ 0.77
USP28-208ENST00000540438 CCDC102BQ68D86 513 aa19.87■□□□□ 0.77
USP28-208ENST00000540438 RALYLQ86SE5 291 aaKnown RBP19.87■□□□□ 0.77
USP28-208ENST00000540438 CCAR1Q8IX12 1150 aaKnown RBP19.87■□□□□ 0.77
USP28-208ENST00000540438 ZNF213O14771 459 aa19.86■□□□□ 0.77
USP28-208ENST00000540438 BCAMP50895 628 aa19.86■□□□□ 0.77
USP28-208ENST00000540438 IMMTQ16891 758 aaKnown RBP19.86■□□□□ 0.77
USP28-208ENST00000540438 CPLX1O14810 134 aa19.86■□□□□ 0.77
USP28-208ENST00000540438 OFD1O75665 1012 aa19.86■□□□□ 0.77
USP28-208ENST00000540438 ANTXR2P58335 489 aa19.86■□□□□ 0.77
USP28-208ENST00000540438 CSPP1Q1MSJ5 1256 aa19.86■□□□□ 0.77
USP28-208ENST00000540438 TBC1D10CQ8IV04 446 aa19.86■□□□□ 0.77
USP28-208ENST00000540438 DSCC1Q9BVC3 393 aa19.86■□□□□ 0.77
USP28-208ENST00000540438 CBX8Q9HC52 389 aa19.86■□□□□ 0.77
USP28-208ENST00000540438 PYCARDQ9ULZ3 195 aa19.86■□□□□ 0.77
USP28-208ENST00000540438 UTRNP46939 3433 aa19.86■□□□□ 0.77
USP28-208ENST00000540438 MARCKSP29966 332 aaPredicted RBP19.86■□□□□ 0.77
USP28-208ENST00000540438 ILDR1Q86SU0 546 aaPredicted RBP19.86■□□□□ 0.77
USP28-208ENST00000540438 SCAND2PQ9GZW5 306 aaPredicted RBP19.86■□□□□ 0.77
USP28-208ENST00000540438 ARMT1Q9H993 441 aa19.86■□□□□ 0.77
USP28-208ENST00000540438 ADAMTS7Q9UKP4 1686 aa19.85■□□□□ 0.77
USP28-208ENST00000540438 PTGS1P23219 599 aa19.85■□□□□ 0.77
USP28-208ENST00000540438 PTPN21Q16825 1174 aa19.85■□□□□ 0.77
USP28-208ENST00000540438 CLIC4Q9Y696 253 aa19.85■□□□□ 0.77
USP28-208ENST00000540438 ATP2B1P20020 1258 aa19.85■□□□□ 0.77
USP28-208ENST00000540438 CYB5R4Q7L1T6 521 aa19.85■□□□□ 0.77
USP28-208ENST00000540438 AKAP2Q9Y2D5 859 aa19.85■□□□□ 0.77
USP28-208ENST00000540438 MAGEB6Q8N7X4 407 aa19.84■□□□□ 0.77
USP28-208ENST00000540438 TRIM5Q9C035 493 aa19.84■□□□□ 0.77
USP28-208ENST00000540438 ORC3Q9UBD5 711 aaPredicted RBP19.84■□□□□ 0.77
USP28-208ENST00000540438 ABCF2Q9UG63 623 aa19.84■□□□□ 0.77
USP28-208ENST00000540438 MRC1P22897 1456 aa19.84■□□□□ 0.77
USP28-208ENST00000540438 C11orf57Q6ZUT1 292 aaPredicted RBP19.84■□□□□ 0.77
USP28-208ENST00000540438 GLI3P10071 1580 aa19.84■□□□□ 0.77
USP28-208ENST00000540438 ARID5BQ14865 1188 aa19.84■□□□□ 0.77
USP28-208ENST00000540438 MPHOSPH8Q99549 860 aa19.84■□□□□ 0.77
USP28-208ENST00000540438 NBPF3Q9H094 633 aa19.84■□□□□ 0.77
USP28-208ENST00000540438 SASS6Q6UVJ0 657 aa19.83■□□□□ 0.77
USP28-208ENST00000540438 DCCP43146 1447 aa19.83■□□□□ 0.76
USP28-208ENST00000540438 UQCRHLA0A096LP55 91 aa19.83■□□□□ 0.76
USP28-208ENST00000540438 hCG_1642624A0A1W2PR95 340 aa19.83■□□□□ 0.76
USP28-208ENST00000540438 CIAO1O76071 339 aa19.83■□□□□ 0.76
USP28-208ENST00000540438 CSF1RP07333 972 aa19.83■□□□□ 0.76
USP28-208ENST00000540438 UQCRHP07919 91 aa19.83■□□□□ 0.76
USP28-208ENST00000540438 NFXL1Q6ZNB6 911 aa19.83■□□□□ 0.76
USP28-208ENST00000540438 FSIP1Q8NA03 581 aa19.83■□□□□ 0.76
USP28-208ENST00000540438 JCADQ9P266 1359 aa19.82■□□□□ 0.76
USP28-208ENST00000540438 ZNF165P49910 485 aa19.82■□□□□ 0.76
USP28-208ENST00000540438 SF3A1Q15459 793 aaKnown RBP19.82■□□□□ 0.76
USP28-208ENST00000540438 APPBP2Q92624 585 aa19.82■□□□□ 0.76
USP28-208ENST00000540438 KIF28PB7ZC32 967 aa19.82■□□□□ 0.76
USP28-208ENST00000540438 PDE8BO95263 885 aa19.82■□□□□ 0.76
USP28-208ENST00000540438 SPECC1Q5M775 1068 aa19.82■□□□□ 0.76
USP28-208ENST00000540438 KCNF1Q9H3M0 494 aa19.82■□□□□ 0.76
USP28-208ENST00000540438 DNAJC5Q9H3Z4 198 aa19.82■□□□□ 0.76
USP28-208ENST00000540438 NIP7Q9Y221 180 aaKnown RBP eCLIP19.82■□□□□ 0.76
USP28-208ENST00000540438 KIAA2012Q0VF49 1180 aa19.81■□□□□ 0.76
USP28-208ENST00000540438 MBD4O95243 580 aa19.81■□□□□ 0.76
USP28-208ENST00000540438 AIDAQ96BJ3 306 aa19.81■□□□□ 0.76
USP28-208ENST00000540438 C8orf76Q96K31 380 aa19.81■□□□□ 0.76
USP28-208ENST00000540438 HPS5Q9UPZ3 1129 aa19.81■□□□□ 0.76
USP28-208ENST00000540438 PDE6AP16499 860 aa19.81■□□□□ 0.76
USP28-208ENST00000540438 CRKLP46109 303 aaKnown RBP19.81■□□□□ 0.76
USP28-208ENST00000540438 ITPK1Q13572 414 aa19.81■□□□□ 0.76
USP28-208ENST00000540438 RASGRF1Q13972 1273 aa19.81■□□□□ 0.76
USP28-208ENST00000540438 CCDC186Q7Z3E2 898 aa19.81■□□□□ 0.76
USP28-208ENST00000540438 SMARCC2Q8TAQ2 1214 aa19.81■□□□□ 0.76
USP28-208ENST00000540438 GPR108Q9NPR9 543 aa19.81■□□□□ 0.76
USP28-208ENST00000540438 PIBF1Q8WXW3 757 aa19.8■□□□□ 0.76
USP28-208ENST00000540438 CARMIL3Q8ND23 1372 aa19.8■□□□□ 0.76
USP28-208ENST00000540438 MCM5P33992 734 aa19.8■□□□□ 0.76
USP28-208ENST00000540438 EVX2Q03828 476 aa19.8■□□□□ 0.76
USP28-208ENST00000540438 HSP90AA4PQ58FG1 418 aa19.8■□□□□ 0.76
USP28-208ENST00000540438 C3orf67Q6ZVT6 689 aa19.8■□□□□ 0.76
USP28-208ENST00000540438 TACC3Q9Y6A5 838 aa19.8■□□□□ 0.76
USP28-208ENST00000540438 DDB1Q16531 1140 aa19.79■□□□□ 0.76
USP28-208ENST00000540438 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.79■□□□□ 0.76
USP28-208ENST00000540438 NEDD4P46934 1319 aa19.79■□□□□ 0.76
USP28-208ENST00000540438 LETM1O95202 739 aaPredicted RBP19.79■□□□□ 0.76
USP28-208ENST00000540438 CDC27P30260 824 aa19.79■□□□□ 0.76
USP28-208ENST00000540438 NCOA7Q8NI08 942 aa19.79■□□□□ 0.76
USP28-208ENST00000540438 FAM200AQ8TCP9 573 aa19.79■□□□□ 0.76
USP28-208ENST00000540438 SDR42E1Q8WUS8 393 aa19.79■□□□□ 0.76
USP28-208ENST00000540438 SDF4Q9BRK5 362 aa19.79■□□□□ 0.76
USP28-208ENST00000540438 CLSTN2Q9H4D0 955 aa19.79■□□□□ 0.76
USP28-208ENST00000540438 CYP2D7A0A087X1C5 515 aa19.78■□□□□ 0.76
USP28-208ENST00000540438 HMGB1P09429 215 aaKnown RBP19.78■□□□□ 0.76
USP28-208ENST00000540438 GYG1P46976 350 aa19.78■□□□□ 0.76
USP28-208ENST00000540438 HSP90AA2PQ14568 343 aaPredicted RBP19.78■□□□□ 0.76
USP28-208ENST00000540438 NOLC1Q14978 699 aaKnown RBP eCLIP19.78■□□□□ 0.76
USP28-208ENST00000540438 PCDHA7Q9UN72 937 aa19.78■□□□□ 0.76
USP28-208ENST00000540438 RIC1Q4ADV7 1423 aa19.78■□□□□ 0.76
USP28-208ENST00000540438 MINDY4BA8MYZ0 360 aa19.78■□□□□ 0.76
USP28-208ENST00000540438 PRDM1O75626 825 aa19.78■□□□□ 0.76
USP28-208ENST00000540438 TRDNQ13061 729 aa19.78■□□□□ 0.76
USP28-208ENST00000540438 XIRP1Q702N8 1843 aaKnown RBP19.78■□□□□ 0.76
USP28-208ENST00000540438 ZNF500O60304 480 aaPredicted RBP19.78■□□□□ 0.76
USP28-208ENST00000540438 PDE8AO60658 829 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms